Query= MSMg01no110_e12.b1 MSMg01no110_e12.b1 CHROMAT_FILE:
MSMg01no110_e12.b1 PHD_FILE: MSMg01no110_e12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:49 2005
(526 letters)
>mm_chr4_67645418_67646343
Length = 926
Score = 872 bits (451), Expect = 0.0
Identities = 513/549 (93%), Gaps = 28/549 (5%)
Strand = Plus / Minus
Query: 4 ggaattc-atatatactatctatgtagaaaataatatatgtatgtgaatatcatatatat 62
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Sbjct: 713 ggaattcaatatatattatctatgtagaaaataatatatgtatgtgaatatcatatatat 654
Query: 63 atatatatatatatatatatatatata----------gtctctaaacaaaaagtaattca 112
||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 653 atatatatatatatatatatatatatatatatatatggtctctaaacaaaaagtaattca 594
Query: 113 caagtcacagtttactaagtattagcaaagagaagaggattcactcaacctctagaaagc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 caagtcacagtttactaagtattagcaaagagaagaggattcactcaacctctagaaagc 534
Query: 173 ctatcatctaatcaatacattgaaagtcagtttaaatatatgtgacctgataccctcttc 232
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Sbjct: 533 ctatcatctaatcaatacattgaaagtcagtttaaatatatgtgacctgataccctcttc 474
Query: 233 tggcatgcaggtgtacatccatagagtacacctcatatccacgagtcctttatgagagaa 292
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 473 tggcatgcaggtgtacatccatagagtacacctcatatccacaagtcctttatgagagaa 414
Query: 293 gagaaatgttgttagcaaagtggaggaagcaaatatgtggagtcattttgggaatggaca 352
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Sbjct: 413 gagaaatgttgttagcaaagtggaggaagcaaatatgtggagtcattttgggaatggaca 354
Query: 353 caaatcccttaggaaagacatcaaagggatatcataaaatttatgatactctgagtaaag 412
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Sbjct: 353 caaatcccttaagaaagacatcaaagggatatcataaaatttaggctactctgagtaaag 294
Query: 413 agaa----------atac-----acacacacacacacacacacacatatatatatggtta 457
|||| ||| | ||||||||||||||||| |||||||||| |||||
Sbjct: 293 agaacaattaaagtataagagaaatacacacacacacacacaaacatatatat--ggtta 236
Query: 458 taagtgtattattcttattgtttgcaatcatcattgggagtcattttatgaaagacacct 517
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Sbjct: 235 taagtgtattattcttattgtttgcaatcatcattgggagtcattttatgaaagacacct 176
Query: 518 aattatata 526
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Sbjct: 175 aattatata 167
Score = 70.3 bits (36), Expect = 3e-16
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 54 catatatatatatatatatatatatatatatatata 89
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Sbjct: 617 catatatatatatatatatatatatatatatatata 652
Score = 70.3 bits (36), Expect = 3e-16
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 50 atatcatatatatatatatatatatatatatatatatata 89
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 618 atat-atatatatatatatatatatatatatatatatata 656
Score = 70.3 bits (36), Expect = 3e-16
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 50 atatcatatatatatatatatatatatatatatatatata 89
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 620 atat-atatatatatatatatatatatatatatatatata 658
Score = 70.3 bits (36), Expect = 3e-16
Identities = 39/40 (97%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 50 atatcatatatatatatatatatatatatatatatatata 89
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 622 atat-atatatatatatatatatatatatatatatatata 660
Score = 68.4 bits (35), Expect = 1e-15
Identities = 38/39 (97%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 50 atatcatatatatatatatatatatatatatatatatat 88
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Sbjct: 624 atat-atatatatatatatatatatatatatatatatat 661
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 26
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 8
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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