BAC Information

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BAC

Clone NameMSMg01-110F03
Chromosome4 (Build37)
Map Location 114,089,065 - 114,089,462
singlet/doubletsinglet
Overlap geneLOC666048
Upstream geneLOC242627, LOC100040625, A630098G03Rik
Downstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-110F03.T7 (MSMg01no110_f03.b1)MSMg01-110F03.TJ (MSMg01no110_f03.g1)
ACCAG323276AG323277
length722712
length of high quality
(start - end)
441 (59 - 499)401 (71 - 471)
definitionCHROMAT_FILE: MSMg01no110_f03.b1 PHD_FILE: MSMg01no110_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:52 2005CHROMAT_FILE: MSMg01no110_f03.g1 PHD_FILE: MSMg01no110_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:13:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCCCCCCCTTCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCTCACCTGAGCAAACCAAATGGCAGAGAAGCAC
CTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAAC
AACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATT
CAGGTGACAGCAGATGCTGGCGCGGATGTGGAGAAAGAGGAACACTCCTT
CATTGTTGGTGGAATTGCAGGTGAAGAATAAAAATTTTTACTGAACTCTT
CTTCACCCCAGAGCCCGACCCCTCCCATCTAGAGATTGTTCCCGGAACAC
TCCTAAACTCTTCACCCCAGAGCTGTGTCACCAGGGAACTGAGAGGCTCC
TCGCAGAACTGAGTGACTTGGAGTATCGAGTTTCGGCTAAAAAGGCACAA
ATCTGTCAAACTGAGGTAACCTACCTGGGGTATACCCTCCGAGGGGGCAA
AAGATGGTTCACAGAGGCCCGGAAGAAGACTGTTATGATGATCCCATCGC
CAACTACCCCACGGCAGGTACGTGAGTTTCTGGGGACTGCTGGCTTTTGT
ATACTCTGGATTCCCGGCTTTGCACCCCTAGCAGCACCTCTATATGCTTT
GACTAACGAAGGGGTTCCTTTTCGAGTGGCAACAACAACCCCCAAAACCT
TTTGACGCTATCACGTCCTCTA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCAGAGGGAAACACTACATGTGGCATGCCA
TAAAAGAAATCCCCGGGCCAAGTCTTCACCAGTTCAGACCTGACAGCATT
CTAGGAAGACTTCCTGGAAGAGGCTCAGCTTTGAGCTGAGCCTTAAAAAT
CAAAATATGGGGGGATTCAGAAGCAGAAGAGAAAAGGAGGAAATTCCTGG
AGAGGGAGGGGGCTCAGCAGAAGCCACTGTGTTTCCGAGCTTGAGGCAGG
ATATACTGGATAGAGTTAAAAGCCTGCAGATCCTGGAGGAGCAGCCTGGC
GAGACGGCGTGGGAGCCATGAAGCAGAGCTGAAGGCTGGGTCAGCCGGCT
GCCGTGTGGATTAAGTGGGTGGACAGAGAGCCAGTGATGGGAGATAAAAG
GGAGTGAAGTGGGTAATATTTAGAAGTTACATCCGAGGGCAGCGAACGTC
CGCCGTCCTTTTGTTCCTTGCGTCGCTCGCCTTCTATTCTGCCCCCCCTC
TTTTTAGGAGAGTCGGTTTTCCTTCCCTCCTGTTTTAGCCCCGCCTATTT
TCTCACACCGTTTTCCCTTTTCTCCCATTTTCACCGCCACTACCCCCCTT
ATATTATGCTCTTTTCCTCATTTTCCCTTGCCTCTTTTTCTTTTCGCCTT
CCCCATTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no110_f03.g1 MSMg01no110_f03.g1 CHROMAT_FILE:
MSMg01no110_f03.g1 PHD_FILE: MSMg01no110_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:52 2005
         (401 letters)



>mm_chr4_114088864_114089662
          Length = 799

 Score =  704 bits (364), Expect = 0.0
 Identities = 391/400 (97%), Gaps = 2/400 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   cagagggaaacactacatgtggcatgccataaaagaaatccccgggccaagtcttcacca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 cagagggaaacactacatgtggcatgccataaaagaaatccccgggccaagtcttcacca 540

                                                                       
Query: 62  gttcagacctgacagcattctaggaagacttcctggaagaggctcagctttgagctgagc 121
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 539 gttcagacctgacagcattctaggaagacttcctggaagaggttcagctttgagctgagc 480

                                                                       
Query: 122 cttaaaaatcaaaatatggggggattcagaagcagaagagaaaaggaggaaattcctgga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cttaaaaatcaaaatatggggggattcagaagcagaagagaaaaggaggaaattcctgga 420

                                                                       
Query: 182 gagggagggggctcagcagaagccactgtgtttccgagcttgaggcaggatatactggat 241
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 419 gagggagggggctcagcagaagccactgtgtttccaagcttgaggcaggatatactgcat 360

                                                                       
Query: 242 agagttaaaagcctgcagatcctggaggagcagcctggcgagacggcgtgggagccatga 301
           ||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 359 agatttaaaagcctgcagatcctggaggagcagcctggcgagacggcttggcagccatga 300

                                                                       
Query: 302 agcagagctgaaggctgggtcagccggctgccgtgtggattaagtgggtggacagagagc 361
           ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct: 299 agcagagctgaaggctgggcca-ccggctgcc-tgtggattaagtgggtggacagagagc 242

                                                   
Query: 362 cagtgatgggagataaaagggagtgaagtgggtaatattt 401
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagtgatgggagataaaagggagtgaagtgggtaatattt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 799
Length adjustment: 9
Effective length of query: 392
Effective length of database: 790
Effective search space:   309680
Effective search space used:   309680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)