Query= MSMg01no110_i04.b1 MSMg01no110_i04.b1 CHROMAT_FILE:
MSMg01no110_i04.b1 PHD_FILE: MSMg01no110_i04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:07 2005
(346 letters)
>mm_chr4_77265157_77265902
Length = 746
Score = 561 bits (290), Expect = e-164
Identities = 329/342 (96%), Gaps = 2/342 (0%)
Strand = Plus / Minus
Query: 5 gaattcc-tatattatccgaatatagggagtgctatgcatgtagtctggcaaaatgcatg 63
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 gaattccatatattattagaatatagggagtgctatgcatgtagtctggcaaaatgcatg 486
Query: 64 tgcatttctgatcatatggaaagaacatgggaaagaatagtagcaaatacaaaagttttg 123
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 485 tgcatttctgatcatatggaaa-aacatgggaaagaatagtagcaaatataaaagttttg 427
Query: 124 tgagttgccaacaggttagaggcaaaaacattagaatcatttggagaaaatatgtagttt 183
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 426 tgagttgccaacaggttagaggcaaaaatattagaatcatttggagaaaatatgtagttt 367
Query: 184 aactttgtccaagtttatggaagaaatgatatacaaagttgggtttgttttgactggaag 243
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 366 aactttgtccaagtttatggaagaaatgatatactaagttgggtttgttttgactggaag 307
Query: 244 tggacagggtccttacttttaagtgtacagtaataattataaagaacacctaactataat 303
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 306 tggacagggtccttacttttaagtgtacagtaccaattataaagagcacctaactataat 247
Query: 304 tctgtccttgaggatgcttccttggctcctgtactggaaaaa 345
|||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 246 tctgcccttgaggatgcttcgatggctcctgtactggaaaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no110_i04.g1 MSMg01no110_i04.g1 CHROMAT_FILE:
MSMg01no110_i04.g1 PHD_FILE: MSMg01no110_i04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:14:07 2005
(193 letters)
>mm_chr4_77156897_77157489
Length = 593
Score = 354 bits (183), Expect = e-102
Identities = 189/191 (98%)
Strand = Plus / Plus
Query: 1 tattgtaagaaggtatcagcgtatgctgccctgtaattgttctttagaacctggcaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattgtaagaaggtatcagcgtatgctgccctgtaattgttctttagaacctggcaagac 260
Query: 61 atgcatcaacccaagaaaactgtatttgggattgtattggtttgactgagaatattctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgcatcaacccaagaaaactgtatttgggattgtattggtttgactgagaatattctct 320
Query: 121 gtaggcttatatgtttgtatccttggtctccagtttaggagatacagacttgctagaaga 180
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gtaggcttagatgtttgtatccttggcctccagtttaggagatacagacttgctagaaga 380
Query: 181 aataagctact 191
|||||||||||
Sbjct: 381 aataagctact 391
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space: 108225
Effective search space used: 108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
