BAC Information

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BAC

Clone NameMSMg01-111B19
Chromosome4 (Build37)
Map Location 70,639,828 - 70,640,411
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC671064, Cdk5rap2, Megf9
Downstream geneLOC100039565, LOC100039979, LOC667638, EG667649
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111B19.T7 (MSMg01no111_b19.b1)MSMg01-111B19.TJ (MSMg01no111_b19.g1)
ACCAG323865AG323866
length1,1421,137
length of high quality
(start - end)
669 (113 - 781)584 (119 - 702)
definitionCHROMAT_FILE: MSMg01no111_b19.b1 PHD_FILE: MSMg01no111_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:00 2005CHROMAT_FILE: MSMg01no111_b19.g1 PHD_FILE: MSMg01no111_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CAATTAGGAATACCCATTGACTGACAAGCACCTGAAAAAATGTTCAACAT
CCTTCCTCTTCAGGGAAATGCACATCAAAACAACCTTGAGTTTCTACCTC
AAATCAGTCAGAATGGCTAAGATCAAAAGTTCAGGTGACAGCAGATGCTG
GCAAGGATATGAAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGCA
AGCTTTTATAACCACTCTGGAAGTCAATCTGGCAGTTCTTCAGACAATTG
GACATAGTACTACCGGAAGATCCAGCAATACCTCTCCTGGGCATATACCC
AGAAGATTTTCCTACTGGTAATAAGAACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAACAGTCAGAAGCTGGAAAGAACCCAGATGTCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACAA
CTCAGCTATTAAATAAAATAAATTTATGAAATTCTTGGGCAAATGTTTGT
TACTAGAGGATATCATCCTTAGTGAGGTAACCCCATCACAAAAGAAGTCA
TTAGATATGCACTCACTGATAAGTGTATATCAGCCCAGAAACTTAAAATA
CCCAAGATACAATTTGCAAAACACAAGAAAATCAAGAAGAGGGAAGACCA
ACATGTGGATACTTTATTGCTCCTTAGAATAGGGAACAGAATACCCATGA
AAGGAGTTACAGAGACCAAGTTTGGAGCTAAGTCGAAAGGATGGACTATC
CAGAGACTACCCCACCCAGGGATTCATCCCATGAATAGCCACCAAACCCA
GACACTATTGCCTTGGCCAGCAAGATTTTGCTGAACGGTCCCTGATATAG
CTGTCCGGTATGAGGCTATGCCAGAGATTGGCAAATACAGAAGTGGATGC
TCCCCGTCTTCTTATAGGATGCAAACATAGGGCCCCCCATTGAAGAACCT
AGAGAAAAGCCCCCAAGGAATCTGAAAAAGGTCTGGCAGCCCCAATGGGT
GGGAACTACCAATTTTGTAACTAATCCAGGTAACCTTCCTCCCAACCTCC
AAAAAAATTCCCTGGGTCCCCTAACTTGGCATAAGGGAATCA
NCCAACCCACGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCCCTTTAAAAGCCCCAATACTTTGTTTGGTTCATTG
CTTTCCATCCTGTGGCCTACAATATAAAGCTTATAAATGTTTCTGATTGA
GGAAATGAGGCTTATCATTTTATTGATGAGAAAACTAGATTACAGTGTGC
AAAATAAAACTCTTTCTTCATCCAGAAGTGACATGAATGCTGAAAATACC
TATGATTAAACTCTCAATGTCCTGTTAGCATTTTAATTTTGGATACAGTT
GGGTCTCCTTGTCGATGGGCTCTGTATCTTGGGTTTACTTAGGCATAGAC
AGAAAATATTTCAGGAAAAAAGCTATTCCTTCACTAGAAAGTCATAGGAT
TTTGGGTGCCTTTGCCCTCAAATGCTGCAAAGGCACTATGTACACAGAAT
TATACAGAGTTATAGTGCAGAGATGATTGCATTACATGGAAGATTGTGTA
CTATGAATAATATGCCAAGTCATACTTTATGATCTGAGATTGATATAGAT
TTACATATCTTGGACTATAGGTTATTTGGAATTCTTTTCTCATAGATATT
GAGGGACAATTACACAGTTAAACAAATTATCCATTACTTAAAACATAACT
CTTTGGTATTAAATGAGTGTGAGCATCCACTTATGTGTTACCTAGGCCCC
AGCATAGCCTCACAAGAGACAGGTATATCAGTGTCCTTTTAGCAAAATCT
TGCTAGAGTGTGCAATGGTGTCAACATTTGGAGGCTGATTATGGGATGGA
TCCCCGGGTATGGCAGTCTCTAGATGGTCCGTCCTTTTGTCTCACCTCTA
AACTTTGTCTTTGAAACTCCCTTCCCTGGGTGTTTTGTTAACTTGCCCCA
CTAATTTCTAACCGATTATTCTCACCGAAAAGTTACTTTTAAAATGATTT
TAACCAAATTTTCCTTCAAATTTTTCTAAAACCTTAAAACCCCCGCTTTA
AAAATTTTGATAGTTTCTCTTACCCCTAAATTTGTGCGCTTTGGAAAAAA
AATTTTTTTTTTGGAATTTAAAAGAATATCCTCCTAATGCTCCTTTTTCA
AATGGGGGTGCATCCCCCCCAAGTAAACACTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_b19.g1 MSMg01no111_b19.g1 CHROMAT_FILE:
MSMg01no111_b19.g1 PHD_FILE: MSMg01no111_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:01 2005
         (584 letters)



>mm_chr4_70639628_70640611
          Length = 984

 Score = 1091 bits (564), Expect = 0.0
 Identities = 579/584 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaatataaagcttataaatgtttctgattgaggaaatgaggcttatcattttattgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaatataaagcttataaatgtttctgattgaggaaatgaggcttatcattttattgatg 260

                                                                       
Query: 61  agaaaactagattacagtgtgcaaaataaaactctttcttcatccagaagtgacatgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaactagattacagtgtgcaaaataaaactctttcttcatccagaagtgacatgaat 320

                                                                       
Query: 121 gctgaaaatacctatgattaaactctcaatgtcctgttagcattttaattttggatacag 180
           | ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gatgaaaatacctatgattaaactctcaatgtcttgttagcattttaattttggatacag 380

                                                                       
Query: 181 ttgggtctccttgtcgatgggctctgtatcttgggtttacttaggcatagacagaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggtctccttgtcgatgggctctgtatcttgggtttacttaggcatagacagaaaata 440

                                                                       
Query: 241 tttcaggaaaaaagctattccttcactagaaagtcataggattttgggtgcctttgccct 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tttcaggaaaaaagctattccttcactagaaagtcacaggattttgggtgcctttgccct 500

                                                                       
Query: 301 caaatgctgcaaaggcactatgtacacagaattatacagagttatagtgcagagatgatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaatgctgcaaaggcactatgtacacagaattatacagagttatagtgcagagatgatt 560

                                                                       
Query: 361 gcattacatggaagattgtgtactatgaataatatgccaagtcatactttatgatctgag 420
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 gcattacatggaagattgtgtactatgaataatatgtcaagtcatactttatgatctgag 620

                                                                       
Query: 421 attgatatagatttacatatcttggactataggttatttggaattcttttctcatagata 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attgatacagatttacatatcttggactataggttatttggaattcttttctcatagata 680

                                                                       
Query: 481 ttgagggacaattacacagttaaacaaattatccattacttaaaacataactctttggta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgagggacaattacacagttaaacaaattatccattacttaaaacataactctttggta 740

                                                       
Query: 541 ttaaatgagtgtgagcatccacttatgtgttacctaggccccag 584
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaaatgagtgtgagcatccacttatgtgttacctaggccccag 784


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)