BAC Information

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BAC

Clone NameMSMg01-111D21
Chromosome4 (Build37)
Map Location 143,811,011 - 143,811,746
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977
Downstream genePramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111D21.T7 (MSMg01no111_d21.b1)MSMg01-111D21.TJ (MSMg01no111_d21.g1)
ACCAG323964AG323965
length1,0961,098
length of high quality
(start - end)		748 (58 - 805)687 (70 - 756)
definitionCHROMAT_FILE: MSMg01no111_d21.b1 PHD_FILE: MSMg01no111_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:18 2005CHROMAT_FILE: MSMg01no111_d21.g1 PHD_FILE: MSMg01no111_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNGGGCATTGGGCGCTATACGACTCCTAAGGGAGXXXXXXXXXXXXXXX
XXXXXXXATTGAGGTTCGATAAACAGGTCACTTACTGAGCCAAGAAGTTT
TAAGCTACCCTGAGCAACATATCTAGGCTGCATGGGGTGCTGGAGGATCT
CAACACTCCCTACAGCCAATTTCTGGTAGCTAAGTGTGTATACACTTGAT
ATGTTATGATCTTGATTCAGAATTTTAGATGAATGGAATATTTTCTTGAT
TTCGTGACAAACTTGTTATGTATCCCTGACTGACCTGAAATTCACCATGC
ATGCACTCTGTACCACATGAATGCCTGGAGGCTGTGAAGCCTAGAAGAGC
CCTAGAACTGGAGCTGGGAGCCATCATGTGGCTGCTGAAAATTTGTTATG
CCTCTAAGAATTCCTGAACCCCAAAAGACCTCCAAGGAAATTCTTCGATG
TAGTGCCATTAGGGTTATTTTGGATTTTTTTTTTACCCCAACAAAGCCCT
GGATAGTCTAGAATTTCCTATGTCCATATGGTTTGCCTCAAAGACACAGG
GACACATGGATTCGCCTACTTCTGCTTCCAGAGTGATGGAATTAAATGTA
TGGGCTATCACATCATGCTCACCACCCAGCCACAATTTCCTTTTCTACCT
ACTGTGCTGGCTGATCTTTTCCCTAACAACCCTAACTTCTGGGGAACCTA
GGGAAGCTACACAAAACCATCTGTAGGGCCAATGTTCTGATGTTAGGCCT
GGCCCCTGGTTAAAGGTTGGGGCCACTTACCCATTTCAATAATATTAACC
CAGAATTTGTTCAGTCTAAAGGAAATACAGGGACAAAGACTTTAGCAGAG
ACTGAAAGAAAGACCATCCCAGATTGTCCCCCCCTTGGGATCCATCCCAT
ATTGCACCACCAAACCCAGACTCTATTGCTGATGCAAGAAGTGCATACCT
GCATTTAGCTGCCTCCTGAGAGGCTCTGCCCGAGCCTTTACCAATACCGG
GGGAAAAACTTGAAAGTTATCCCTCCAAACTGACCCTGGGAAATTCCATG
GAAGGAATTTGTGGGAAAAGACCTAAAAAGACTTTGAAAAATTTTC

NNNTTATCATGGGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTAGAAAATCTTTCTTTATTCCTGTCTTGAC
CCAATTTCACTGAGTAGAGAGCTGTTCAGTTTCTATCAATTTGTATCTTT
CTGGTTTTTTCCTGTTGTTGAAATCCAGCATTGATCCATGGTAGTTTTAT
GAAAAGCAGGTTTTTTTTTTCAATTTTCTGGAATTTGTTGAAATTTGCTT
TGTGAACAAGTATCTTGTCAATTTTCAAGAAAGTTCTTGAGTGTTGAGAA
ACATGTATGTTCTTTGGTGTTTCAGTAAAATGTATAGTATTTGTTATGTC
CACTTTTTTCCAATATCTGTTAGCACCTGTGTTTGTTTGTTAACATCTTT
TATCCTCCTGATTTAATTATCATCTTGGAGGCTCACTGCCTCACTCTGCT
AACTTAGTTCTAGTCCTAGATGCTTCTAGCCTCTGTACAATCTCATTTAG
ATCTAGAATGTTTTCAGCCTTTGAAATTTTCTGCTGAACAAGCTTAGCCT
TTTTTATACTTTCTGAACTGTGACTAACTGGTTCAACTCATCTTTTCTTC
TTCAAACTCTGCCTGAGCTGATTAATTCAATCTGAGTTATCTGGGCTTTT
GAGTGCATTTTTCTCATACTAACTTAAAAAATATATATTAAACTCATCCT
TCTCATTCTCTGGTTCATTTAGTTTTCCCATGTATGTAGCTTACTCACTC
TCTGTAATTTGTCTCTGTAGAATTGTTTCAACCTAAAAGCTTGCTCTCTC
TGTCTGTACAGCCTGTGAAGTAGCTTCTCTTTCCCTCTTATGTTCATGAG
GGTTGGGCATCTTTTCTTTGATTTGTCACTTTTGTCTGCCACTCAATTAT
ACATCACTTTCCAAAATGGGTGCTTCGTTCTACAACAAACTAACTTTACC
TTAATTTATTTTTTGGAATTTAAGGTTTTTTAACTAAGGGGTGGCTTCCA
TATTTCTATTTCCAAAAATTTAAGGGGGTTGTGGTTAAAACGCCTTTGGA
CCCCCCCCCCTCTGGATAAAATTTTTTTTTTTCTGTACAATAAAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_d21.b1 MSMg01no111_d21.b1 CHROMAT_FILE:
MSMg01no111_d21.b1 PHD_FILE: MSMg01no111_d21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:18 2005
         (748 letters)



>mm_chr4_143810799_143811946
          Length = 1148

 Score = 1321 bits (683), Expect = 0.0
 Identities = 722/737 (97%), Gaps = 6/737 (0%)
 Strand = Plus / Plus

                                                                       
Query: 17  caggtcacttac-tgagccaagaagttttaagctaccctgagcaacatatctaggctgca 75
           |||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 213 caggtcactt-cttgagccaagaagttttaagctagcctgagcaacatatctaggctgca 271

                                                                       
Query: 76  tggggtgctggaggatctcaacactccctacagccaatttctggtagctaagtgtgtata 135
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tggggtgttggaggatctcaacactccctacagccaatttctggtagctaagtgtgtata 331

                                                                       
Query: 136 cacttgatatgttatgatcttgattcagaattttagatgaatggaatattttcttgattt 195
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 332 cacttgatatgttatgatcttgattcagacttttagatgaatggaatattttcttgattt 391

                                                                       
Query: 196 cgtgacaaacttgttatgtatccctgactgacctgaaattcaccatgcatgcactctgta 255
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tgtgacaaacttgttatgtatccctgactgacctgaaattcaccatgcatgcactctgta 451

                                                                       
Query: 256 ccacatgaatgcctggaggctgtgaagcctagaagagccctagaactggagctgggagcc 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccacatgaatgcctggaggctgtgaagcctagaagagccctagaactggagctgggagcc 511

                                                                       
Query: 316 atcatgtggctgctgaaaatttgttatgcctctaagaattcctgaaccccaaaagacctc 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atcatgtggctgctgaaaatttgttatgcctctaagaattcctgaaccccaaaagacctc 571

                                                                       
Query: 376 caaggaaattcttcgatgtagtgccattagggttattttggatttttttttt----accc 431
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||    ||||
Sbjct: 572 caaggaaagtctttgatgtagtgccattagggttattttggattttttttttttttaccc 631

                                                                       
Query: 432 caacaaagccctggatagtctagaatttcctatgtccatatggtttgcctcaaagacaca 491
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 caacaaagtcctggatagtctagaatttcctatgtccatatggtttgcctcaaagacaca 691

                                                                       
Query: 492 gggacacatggattcgcctacttctgcttccagagtgatggaattaaatgtatgggctat 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gggacacatggattcgcctacttctgcttccagagtgatggaattaaatgtatgggctat 751

                                                                       
Query: 552 cacatcatgctcaccacccagccacaatttccttttctacctactgtgctggctgatctt 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cacatcatgctcaccacccagccacaatttccttttctacctactgtgctggctgatctt 811

                                                                       
Query: 612 ttccctaacaaccctaacttctggggaacctagggaagctacacaaaaccatctgtaggg 671
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 ttccctaacaaccctaacttctggggaacctagggaagctacacaaaaccatctgtaggg 871

                                                                       
Query: 672 ccaatgttctgatgttaggcctggcccctggttaaaggttggggccacttacccatttca 731
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 872 ctaatgttctgatgttaggcctggcccctggttaaaggttggggccacttacccatctca 931

                            
Query: 732 ataatattaacccagaa 748
           |||||||||||||||||
Sbjct: 932 ataatattaacccagaa 948


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1148
Length adjustment: 10
Effective length of query: 738
Effective length of database: 1138
Effective search space:   839844
Effective search space used:   839844
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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