Query= MSMg01no111_h15.b1 MSMg01no111_h15.b1 CHROMAT_FILE:
MSMg01no111_h15.b1 PHD_FILE: MSMg01no111_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:51 2005
(567 letters)
>mm_chr4_51998530_51999495
Length = 966
Score = 1073 bits (555), Expect = 0.0
Identities = 564/567 (99%), Gaps = 1/567 (0%)
Strand = Plus / Plus
Query: 1 gtttttaggtttaataatcttattttgtcacagctttaatggatatgatggaaaacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtttttaggtttaataatcttattttgtcacagctttaatggatatgatggaaaacacac 260
Query: 61 acacaagcatttatttgaggtatctaatgtatcaatttcaactatcccacttctatgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacaagcatttatttgaggtatctaatgtatcaatttcaactatcccacttctatgtag 320
Query: 121 actataaaataaatttatgatgaaaagatggttacttcatgggttcaagaagggcagggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actataaaataaatttatgatgaaaagatggttacttcatgggttcaagaagggcagggg 380
Query: 181 cactagaaatgtctgtcaaagagcacaagggttcaattgtatagaatgagtatggtttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactagaaatgtctgtcaaagagcacaagggttcaattgtatagaatgagtatggtttgg 440
Query: 241 agtgttatagttacattatcactataagtaataatattgtattataaactcaaaatttat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgttatagttacattatcactataagtaataatattgtattataaactcaaaatttat 500
Query: 301 gaatatgacagaatctaaggttgtcttctagtactaatgcctgcttagtgactgttttga 360
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 501 gaatatgacagaatctaaggttgtct-ctagtactaatgggtgcttagtgactgttttga 559
Query: 361 ggccatgaatttctaaacatattcagattttagtactcagtcttagcacttgtttttttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggccatgaatttctaaacatattcagattttagtactcagtcttagcacttgtttttttt 619
Query: 421 attggatatttttaaatttacatttcaaatgttatcccctttcccattccctcccccctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 attggatatttttaaatttacatttcaaatgttatcccctttcccattccctcccccctt 679
Query: 481 gggaactctcattccatctcccttccccctgcttctgtgaggatgttctcccaactacct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gggaactctcattccatctcccttccccctgcttctgtgaggatgttctcccaactacct 739
Query: 541 acccactcctgcctccccgtcctggca 567
|||||||||||||||||||||||||||
Sbjct: 740 acccactcctgcctccccgtcctggca 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 966
Length adjustment: 10
Effective length of query: 557
Effective length of database: 956
Effective search space: 532492
Effective search space used: 532492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_h15.g1 MSMg01no111_h15.g1 CHROMAT_FILE:
MSMg01no111_h15.g1 PHD_FILE: MSMg01no111_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:51 2005
(580 letters)
>mm_chr4_52166048_52167027
Length = 980
Score = 1075 bits (556), Expect = 0.0
Identities = 574/580 (98%)
Strand = Plus / Minus
Query: 1 aggtcacatgtcacatctgcaaaacctcccttgatcgcctgaggcagctatcacctgatt 60
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 730 aggtcacatgtcacatctgcaaaacctcatttgatcgcctgaggcagctatcacctgatt 671
Query: 61 ttcttgtaattacctccttatgtcagttgcttccatctctggtgacaattttttattcca 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 670 ttcttgtaattacctccttatgtcagttgcttccatctctggtgacaactttttattcca 611
Query: 121 ttctatatcccaaactcctaagagagttcttaaagtaaatacatacctaataaatattta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 ttctatatcccaaactcctaagagagttcttaaagtaaatacatacctaataaatattta 551
Query: 181 tcaacttgaatgaataaattaaaaattctaggctggtttcagctgaataaacgagaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcaacttgaatgaataaattaaaaattctaggctggtttcagctgaataaacgagaaagg 491
Query: 241 ttcatgatttaattacagtttacgttgccagggaaaacggtgatcattctgaactccact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttcatgatttaattacagtttacgttgccagggaaaacggtgatcattctgaactccact 431
Query: 301 tccctccataataatttctattgcaacagttaattgcatggcaaaagcattcagtagcct 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tccctccataataaggtctattgcaacagttaattgcatggcaaaagcattcagtagcct 371
Query: 361 gaatccatgcattgcaattttatgcaaagcagcctaaaaaaattctgactttcagcaaaa 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gaatccatgcattggaattttatgcaaagcagcctaaaaaaattctgactttcagcaaaa 311
Query: 421 ctatgatttttaattgtttcatttttgaaatcttatgcctacactttctaacaataaaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctatgatttttaattgtttcatttttgaaatcttatgcctacactttctaacaataaaat 251
Query: 481 gatatcagattcacttaaaatataaagtaaacataaggattatatatgttgggctcagag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gatatcagattcacttaaaatataaagtaaacataaggattatatatgttgggctcagag 191
Query: 541 agagctcagaggttaagggcactggctgctcttccaaaga 580
||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 agagctcagaggttaagggcactggctgctcttccaaaga 151
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
