BAC Information

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BAC

Clone NameMSMg01-111J14
Chromosome4 (Build37)
Map Location 59,729,232 - 59,729,561
singlet/doubletsinglet
Overlap geneE130308A19Rik
Upstream geneOlfr267, AI314180, LOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, LOC100041592
Downstream gene1110054O05Rik, Snx30, Slc46a2, LOC100041656, Mup4, LOC620807, LOC100041658, LOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111J14.T7 (MSMg01no111_j14.b1)MSMg01-111J14.TJ (MSMg01no111_j14.g1)
ACCAG324228AG324229
length1,2031,158
length of high quality
(start - end)
337 (114 - 450)331 (122 - 452)
definitionCHROMAT_FILE: MSMg01no111_j14.b1 PHD_FILE: MSMg01no111_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:08 2005CHROMAT_FILE: MSMg01no111_j14.g1 PHD_FILE: MSMg01no111_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCTATTGGGCGCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCGC
ACATGGAGTTCCCATTTAAGTCTCTTCAAGCAGAGCAATTCAGTCAGAAG
TCCCGTGAAGCCTTTGAATCAGTCAGCTTGGAGAGGAGTTTGAGTCAGAA
CAGCTGAGTTGACCAGCCATCCAGAGTTCAGAAAGAGCTAGAAAGGGTGA
GTTTATTCAGTGTAAGTCTCAGAGGCTGAAACATTCTAGGCCTACGATAG
CAGGCAGAGGCTGGAAGGGGAAGCCTTCAAGGTCCAGGCTTGCAGAAGTT
TAGATTGTATAGAGGCTAGAAGCTTCTAGGCCTAGGGATAGTTACATAAA
AACGTTCTGGGCTCAACCCAAGCCATGTATTCATAAAGCTCTAGTATGGC
TCTCCTCTCATCACTTCATCTGAGGAAATACCAGCAAAATCACATTTACA
GGGCAGTAACCAGAGGAGTGTGTGTGAACTGTGAGAGCATGGCAAGATGC
ATGTCACTGTTCAGTTTTAAAAAATAATAATAATGATTTGTCTGTTAAGT
ACCTTTACATTTCATTATAAGCTGTGGTGTAGGGTTTACCATGGGCACAC
CAATGTTACTGAAAAGAAAAAAAAAATTCACAGTAGAGACATAGCTGGTA
CCTCAAATTCATTTTCTTGCTGGTTTTATCATGCAAACATCTATCTAGAA
TAATTCTTGTGAACTATGGTAACTGCTTGCTGATGATAAAAAAAAAACAC
TCCCTGCTGTTAAATGTTCACTCTCCGCCGTAAGAACTTTCCTTCCTCCG
TCCCCTGCCCATCACCCCTTATCCTAGGAAGACCCCGAGAGAATTTCCTT
GCTTTACAACCTCCTCTGGTTCCAAGATTTTCAGCTTTCAGTATCTGTTA
TGGTCCCTCCGGTATCCCAGATTATTTTACCCGTAATTCTTCTGGTGCGG
AATCTTTCCTTATCCTTTTCTGGCTTTTCCATATGTCATAATGAACTTCC
TACCGTGCAACCCATTTCCTGAGGCCTTTGTAAACCTCTTCGGCCACGCC
TCTAAAATAACCCCCGCTTTTCCCCTATAGGGACCCCCCCTTGTGCTACA
ATTCCTGGTGGATAATGTGGTAGTTCTCCCCCCCTTCCCAAAAATACCTC
GTGTCTAATACCATCTTTCTCTTACTCCAGTCCCTCATCTTGAGATAAAC
TGA
TTTGGGACCATTGGAGGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCTTTAAAGTTCAGTGAGGGACTCTGGCTCAA
AAAATTAACCGTAAGGGCTGAAGAGATGGGTGAATGATAAAGGATTGGCT
GTGCAAGAATGAATTTGAATCTGCAGAACTAAATCTAGGTCTGATGATCT
AGAATCGCAGGCCTTTTGCAGTGAAATGGAAGAAGAGTTCCAGATGCTGA
ACCCAAAAGAAGCCAGGCCCAAGGTTCCGTTCATAGGCATTATAGCAACA
GGCCAGCCAGCCAGCCAGCCAAACTGTGATATTTCAAGTCAGGTGCTAGG
GAGCCATGGAAGAAAGAATTCTTCTAATATGGTTCACAGATATTCTATGT
ATGTTATATCTAATTTTTAAAAAAGAAAAAAAACTTTAAAAAGGAATGGA
TTGGAAACTTCTAAACCTGGACACAGATGCATGCTAGTTGCCATTGTTGT
TCTGTTTACTATTGTTTTCCCCTGGCCTTACTTGATTTTGTTGTTAGTTG
AGAACACATCGCTTGTTCAGGGTTTGAAAACTACTTCCTGGCTCTCTCCC
TGCTGAGTGCAGGAGTGTCTTCCCTTGCTGCTGCCTCCTGTGGNGCATTC
TGAACTGCTTGAAAAGAGAGGCTACCACAGCTCCCTTGGGCTGTTCTCCA
GCACATGCAACATTGATTTCTTAAGTAAGCTTGAGACCCAGCAGAAACGA
GGGAGAGCGTTTCAAGAAAGACTGGACTGAAGATGCCTTGAGGAGGTCAG
CTGAGTTCAGTAGCTGAAAATGGCGCTGAGGCAGATGCAGGAGAACTGCC
GACTCCTGCAGCACATCAGCCGGGTTCACAGCCATCTTCAGTTGTCCTGC
AGCAGTTGCTGAAATTTCTCCTTGATGTGGTGCCCCCGGTTGTGTGCTCC
CACGGCCTGAAATCATCCCTTCATTTTTAAATTAAACCCCAAAGGTTTTT
CAAATCAAATTTCCAACTTTTTCTTTTTCTGTTAAATTATTTAAATTCCT
TTCCAACCTTTAATTGGACCCCTTGGCCCATTTAAAGTCCACTTCCTCCC
CCCTGGGGGTATTTTTTATGGTTTTCCTTATTTGACTCCTCCCTTGGGTA
TTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_j14.g1 MSMg01no111_j14.g1 CHROMAT_FILE:
MSMg01no111_j14.g1 PHD_FILE: MSMg01no111_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:08 2005
         (331 letters)



>mm_chr4_59729032_59729763
          Length = 732

 Score =  623 bits (322), Expect = 0.0
 Identities = 328/330 (99%), Gaps = 1/330 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagatgggtgaatgataaaggattggctgtgcaagaatgaatttgaatctgcagaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagatgggtgaatgataaaggattggctgtgcaagaatgaatttgaatctgcagaacta 260

                                                                       
Query: 61  aatctaggtctgatgatctagaatcgcaggccttttgcagtgaaatggaagaagagttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatctaggtctgatgatctagaatcgcaggccttttgcagtgaaatggaagaagagttcc 320

                                                                       
Query: 121 agatgctgaacccaaaagaagccaggcccaaggttccgttcataggcattatagcaacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgctgaacccaaaagaagccaggcccaaggttccgttcataggcattatagcaacag 380

                                                                       
Query: 181 gccagccagccagccagccaaactgtgatatttcaagtcaggtgctagggagccatggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagccagccagccagccaaactgtgatatttcaagtcaggtgctagggagccatggaa 440

                                                                       
Query: 241 gaaagaattcttctaatatggttcacagatattctatgtatgttatatctaatttttaaa 300
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 gaaagaattcttctaatatggttcacagatattcaatgtatgttatatctaatttttaaa 500

                                         
Query: 301 aaagaaaaaaaa-ctttaaaaaggaatgga 329
           |||||||||||| |||||||||||||||||
Sbjct: 501 aaagaaaaaaaaactttaaaaaggaatgga 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space:   232806
Effective search space used:   232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)