Query= MSMg01no111_k07.b1 MSMg01no111_k07.b1 CHROMAT_FILE:
MSMg01no111_k07.b1 PHD_FILE: MSMg01no111_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:13 2005
(607 letters)
>mm_chr4_140249330_140250336
Length = 1007
Score = 1154 bits (597), Expect = 0.0
Identities = 603/607 (99%), Gaps = 4/607 (0%)
Strand = Plus / Plus
Query: 1 tggcacaggggaactactattgagtttccccatttggaaacctccttccaagccaagcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcacaggggaactactattgagtttccccatttggaaacctccttccaagccaagcag 260
Query: 61 gtctgttatctgtgaaagaaaagaaacaactttactccgataggaaggaagtcctgtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctgttatctgtgaaagaaaagaaacaactttactccgataggaaggaagtcctgtctg 320
Query: 121 gagatccggcctgtggactaggaggtggctggctgagaaacacacacacacacacacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagatccggcctgtggactaggaggtggctggctgagaaacacacacacacacacacaca 380
Query: 181 cacacacacacacactgctacctctagagctgctgctgtgggagttttggagtattgatg 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacacac----tgctacctctagagctgctgctgtgggagttttggagtattgatg 436
Query: 241 aaggccttagagttcacagatgtctaaggcagaggcagagaatctgcaactcccaagagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaggccttagagttcacagatgtctaaggcagaggcagagaatctgcaactcccaagagc 496
Query: 301 tccaaacttttttatttttttcttttggtttttcgagacagggttgctctgtgtagccct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tccaaacttttttatttttttcttttggtttttcgagacagggttgctctgtgtagccct 556
Query: 361 ggctgtcctggaactcactctgtagaccaggctggctcgaactcagaaatccccctgcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggctgtcctggaactcactctgtagaccaggctggctcgaactcagaaatccccctgcct 616
Query: 421 cccaagtgctgagattaaaggcatgcgccaccactgcctgacttttgtgaaaatctacca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cccaagtgctgagattaaaggcatgcgccaccactgcctgacttttgtgaaaatctacca 676
Query: 481 gcctctgcccttgagtgctggattaaaggaatatgccccgggccaggcttcaattcttcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcctctgcccttgagtgctggattaaaggaatatgccccgggccaggcttcaattcttcc 736
Query: 541 gtcttacagcctggggggaattgaattcaattcctaattctcccaattgctgggattact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gtcttacagcctggggggaattgaattcaattcctaattctcccaattgctgggattact 796
Query: 601 gctgcat 607
|||||||
Sbjct: 797 gctgcat 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no111_k07.g1 MSMg01no111_k07.g1 CHROMAT_FILE:
MSMg01no111_k07.g1 PHD_FILE: MSMg01no111_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:13 2005
(582 letters)
>mm_chr4_140395264_140396245
Length = 982
Score = 1050 bits (543), Expect = 0.0
Identities = 573/583 (98%), Gaps = 2/583 (0%)
Strand = Plus / Minus
Query: 1 gatttaccaggggggccatttccccag-cccttgattttatttgcttatcccagatggct 59
|||||||||| |||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct: 609 gatttaccagtggggccatttccccagtccc-tgattttatttgcttatttaagatggct 551
Query: 60 cttgctacagaagccagtctgaccttgaactcctaatcctcctgcataccgccatcttag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cttgctacagaagccagtctgaccttgaactcctaatcctcctgcataccgccatcttag 491
Query: 120 acagcagtcactgttcgagatgctggtttgtgtggtggtgagcctagtctggcaccttgg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acagcagtcactgttcgagatgctggtttgtgtggtggtgagcctagtctggcaccttgg 431
Query: 180 tctgctgagatggaaagggtcacacagcattctcatgcatgggtccccgtctcttcctgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctgctgagatggaaagggtcacacagcattctcatgcatgggtccccgtctcttcctgt 371
Query: 240 ctggtgcccacccctccaagaccctcagcaccatttgtagcagcagtggtcatggctgtg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ctggtgcccacccctccaagaccctcagcaccatttgtagcagcagtggtcatggctgtg 311
Query: 300 acttccagtgcttcccatattatgcctttaactctcacagcaagcttgcaaggcagaaag 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acttccagtgcttcccataatatgcctttaactctcacagcaagcttgcaaggcagaaag 251
Query: 360 gactacggtctccattttgcaaagaaacaaagacagagagagagagattgactttctgaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gactacggtctccattttgcaaagaaacaaagacagagagagagagattgactttctgaa 191
Query: 420 gacagagagcccccaactgccggggctgggatttgaacccacatctgcttgattccagat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gacagagagcccccaactgccggggctgggatttgaacccacatctgcttgattccagat 131
Query: 480 tctgatagctctactgcagggatgactgatccctggggattctctctgccgcacagccca 539
||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct: 130 tctgatagctctactgcagggatgactgatccctggggattctctctgctgcagagtcca 71
Query: 540 tgtgagtggtggggtgggggcacccctagacatgctccatgct 582
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tgtgagtggtggggtgggggcacccctagacatgctccatgct 28
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
