BAC Information

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BAC

Clone NameMSMg01-111O18
Chromosome4 (Build37)
Map Location 17,790,626 - 17,791,321
singlet/doubletsinglet
Overlap geneMmp16
Upstream geneLOC100040154, LOC667212, LOC100040173
Downstream geneLOC667251, LOC435772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111O18.T7 (MSMg01no111_o18.b1)MSMg01-111O18.TJ (MSMg01no111_o18.g1)
ACCAG324469AG324470
length1,1531,116
length of high quality
(start - end)		711 (74 - 784)696 (77 - 772)
definitionCHROMAT_FILE: MSMg01no111_o18.b1 PHD_FILE: MSMg01no111_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:51 2005CHROMAT_FILE: MSMg01no111_o18.g1 PHD_FILE: MSMg01no111_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
ATTATGTATATTAAATCTTTAATTTTATATTGGAGTATAAAAGATGTCAT
AAGTGCACTTGGATCCAATGTCCCTCCCTGAGAACCTGGAAATCATTTCT
TACTTAAACTGACTTAGGAGCCTATGTTTCAGACATAACCTTTGTACTTT
AATTCTAGGTTTCTCCCCCAAACCCTTCATTGGAATGTGTTTCTGGAAAG
TGTGCGACCTCACAACACTATAGTGATAATGAAACCTGGTAATTCAGGAT
ATTAAGGTTTAAGCATTTCATTGTTATTTAACATTGCTTTTATGGTTAAA
TTGAAACAACTGAAGTCGGAGGTCATTCCATTGACCTAATCTCCCAGATT
TTTCTCTAGTAAGTACCTAATGACAAAGGGTGCCTATTTCTGCACTTCTA
GTCACAAGAGAGACTATAGGAAGTAAAACTCCTCCTACTCTCGGTCTCAA
GGATGAGTGACTGTTTACATGTTTACACTCTATCATTAAAGATGTGCTAT
TTACAATCAATGAAAATGGCTAATAAGTGGATATTAGCCAAGAAAAAAAT
GTATAGAATACCCAAGATACAGTCCACAGAACTCCAAAAGCTCAACAAAG
CTGAAGTGCCCAAATGAGGACACCTCAGTTCCACTTGAAAGAAAAAAGAA
AGTAATCACAAGTGTAGGGAGGAACCTGGGAAGGAAAATGGACTGAGAGG
GGGGAGAAAAGGGAAGGAATAGGGGTGTGAAGTGTGTTATCTTTTTTTTT
TTTTTTTTCTTTTNTTCTTTTTTTTTTTTTTTTTTTTTCTCTTTCTTTTT
CTTTTTTTTTTTTTTTCTTTATTCCCTCTTTTTTTTTTCTTTCCTTTTCT
TTCCTTCTTTTTTTCCTCTTTTCCTTTTTTTTTCTCTTATTTTCCTTTCC
CTTTTTTTTTTTCTTTTCTCTCTTTTTTTTCTTTTTTTTTTTTATTTTTT
TTTTTTTCTTTTATTTTTTATTTTTCTTTTTTCTTTTACCTCTTTCTATT
ATTTTATATCTCTTTTTTCTCTTCCCTTTCTCTTTTCCTTTTCTTCTCTT
CTTTTTNTTTTTTATTATTTTCTTTTTCTTTTTATTTCTATTTCTATTTC
TTT

GGGGTTCTGATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCCTTTAGGAGGCTTCTTGTATGTTCATGGGCAT
CTCTTTCTTTAGGTTTGGGAAGTTTTCTTCTAGAATTTTGTTGAAGATAT
TTGCTGGCCCTTTAAGTTGAAAATCTTCATTCTCATCTACTCCTATTATC
CATAGGTTTGGTCTTCTCATTGTGTTCTGGATTTCCTGGATGTTTTGAGT
TAGGATCTTTTTGCATTTTGCATTTTCTTTGTTTGTTATGCCCATATTCT
CTATGGAATCTTCTGCACCAGAGATTCTCTCTTCCATCTATTGTATTCTG
TTGCTGATCCTCACATCTATGGTTCTAGAATTTTTTCCTAGGGTTTCTAT
CTCCAGCCTTGCCTCACTTTGGGTTTTCTTTATTGTGTCCACTTCTCTTT
TTAGGTCTAGTATGGTTTTGTTCATTTCCATCACCTGTTTGGATGTGTTT
TCCTCTTTTTCTTTAAGGACTTGTAACTCTTTAGCAGTGTTCTCCTATAT
TTCTTTGAGTTATTAAAGTCCTTCTTGATGTCCTCTACCATCATCATGAG
ATATGCCTTTAAATCCGGGTCTAGCTTTTCGGGTGTGTTGGGGTACCCAG
GACTGGCTGAGGTGTGAGTGCTGGGTTCTGATGATGGTGAATGGTCTTGG
TTTCTGTTAGTAAGATGCTTACATTTGCCTTTCACCATCTGGTAATCTCT
GGAGTCAGTTGTTATAGTTGTCTCTGGTTAGAGGTTGTTCCTTTCTTGAT
TCTGTTAGCCTCTACCAGCAGACCTGGGAGACTAGTTCTCTCCTGAATTT
CAGTGGTTAGAGCACTCTCTGCAGACAAGCTCTCCTCTTGCAGAGAAGGT
GCACAGATATCTGGTGATTGGATTTTGCCTCCTGGCAAAAAATGAAGGCC
CCGATAATGGCCTGTCCCAAAACCGGTTAGCTTTCTAATCTAAACTCCTC
CCCGGGGAAAATTAATCTTGGCAGTGATTTGGAAAAGAAAATTGTTTTCC
CAAGGAGGCCTCCCTCAAAAATTCTCCCCATTGTGGGGGGAACCCCTCTC
CTTTGGTGTGGGAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_o18.b1 MSMg01no111_o18.b1 CHROMAT_FILE:
MSMg01no111_o18.b1 PHD_FILE: MSMg01no111_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:51 2005
         (711 letters)



>mm_chr4_17790626_17791736
          Length = 1111

 Score = 1249 bits (646), Expect = 0.0
 Identities = 683/696 (98%), Gaps = 2/696 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatattggagtataaaagatgtcataagtgcacttggatccaatgtccctccctgaga 60
           |||||||||||||||||||||||||||||||| |  |||||||||||||||| |||||||
Sbjct: 696 tttatattggagtataaaagatgtcataagtggaagtggatccaatgtcccttcctgaga 637

                                                                       
Query: 61  acctggaaatcatttcttacttaaactgacttaggagcctatgtttcagacataaccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 636 acctggaaatcatttcttacttaaactgacttaggagcctatgtttcagacataaccttc 577

                                                                       
Query: 121 gtactttaattctaggtttctcccccaaacccttcattggaatgtgtttctggaaagtgt 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 576 gtactttaattctaggtttctcccccaaacacttcattggaatgtgtttctggaaagtgt 517

                                                                       
Query: 181 gcgacctcacaacactatagtgataatgaaacctggtaattcaggatattaaggtttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gcgacctcacaacactatagtgataatgaaacctggtaattcaggatattaaggtttaag 457

                                                                       
Query: 241 catttcattgttatttaacattgcttttatggttaaattgaaacaactgaagtcggaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 catttcattgttatttaacattgcttttatggttaaattgaaacaactgaagtcggaggt 397

                                                                       
Query: 301 cattccattgacctaatctcccagatttttctctagtaagtacctaatgacaaagggtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 cattccattgacctaatctcccagatttttctctagtaagtacctaatgacaaagggtgc 337

                                                                       
Query: 361 ctatttctgcacttctagtcacaagagagactataggaagtaaaactcctcctactctcg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 336 ctatttctgcacttctagtcacaagagagactataggaagtaaaactcctcttactctcg 277

                                                                       
Query: 421 gtctcaaggatgagtgactgtttacatgtttacactctatcattaaagatgtgctattta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gtctcaaggatgagtgactgtttacatgtttacactctatcattaaagatgtgctattta 217

                                                                       
Query: 481 caatcaatgaaaatggctaataagtggatattagccaag--aaaaaaatgtatagaatac 538
           |||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||
Sbjct: 216 caatcaatgaaaatggctaataagtggatattagccaagaaaaaaaaaagtacagaatac 157

                                                                       
Query: 539 ccaagatacagtccacagaactccaaaagctcaacaaagctgaagtgcccaaatgaggac 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ccaagatacagtccacagaactccaaaagctcaacaaagctgaagtgcccaaatgaggac 97

                                                                       
Query: 599 acctcagttccacttgaaagaaaaaagaaagtaatcacaagtgtagggaggaacctggga 658
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 96  acctcagttccacttggaagaaagaagaaagtaatcacaagtgtagggaggaacctggga 37

                                               
Query: 659 aggaaaatggactgagaggggggagaaaagggaagg 694
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  aggaaaatggactgagaggggggagaaaagggaagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 711
Length of database: 1111
Length adjustment: 10
Effective length of query: 701
Effective length of database: 1101
Effective search space:   771801
Effective search space used:   771801
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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