Query= MSMg01no112_b21.b1 MSMg01no112_b21.b1 CHROMAT_FILE:
MSMg01no112_b21.b1 PHD_FILE: MSMg01no112_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:10 2005
(574 letters)
>mm_chr4_104752066_104753039
Length = 974
Score = 1023 bits (529), Expect = 0.0
Identities = 560/573 (97%), Gaps = 7/573 (1%)
Strand = Plus / Plus
Query: 7 gaattctatcttgtg--ttccaagccttaaatccaaagttgctggttactctcatagcac 64
||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 gaattctatcttgtgggt--caagccttaaatccaaagttgctagttactctcatagcac 261
Query: 65 agataccactctgcaccagtgggcatatcttgccaggcttgttagattgtagttcccaga 124
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agataccactatgcaccagtgggcatatcttgccaggcttgttagattgtagttcccaga 321
Query: 125 gttcacgttgggaaagactgttgatggctttttttttt---ctccaagtaggcagcataa 181
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 322 gttcacgttgggaaagactgttgatggctttttttttttttctccaagtaggcagcatag 381
Query: 182 ccttctgtgtagcctctggcgctgtttgcttgcccgttcagatgaagcttccaggtcaac 241
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccttctgtatagcctctggcgctgtttgcttgcccgttcagatgaagcttccaggtcaac 441
Query: 242 accagcttgatttctctatcttatgattcaagtgtgtggtgactgacttctgcaatcagg 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 accagcttgatttctctatcttatgattcaagtgtgtggtgactgacttctgcaatcagg 501
Query: 302 tcttacccttcagttcctgatgggcagccaagagcaatcacagtagccggcattgtttgg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tcttacccttcagttcctgatgggcagccaagagcaatcacagtagccggcattgtttgg 561
Query: 362 gaacatctataggaccccttcctctgaccaacaaattgaagagggataagacctttcatc 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 562 gaacatctataggaccccttcctctgaccaacaaattgaagagggataagaccttttatc 621
Query: 422 aagttgaaaaggaatgggccctttgaacaagttgaagaagggcctatattttattttcta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagttgaaaaggaatgggccctttgaacaagttgaagaagggcctatattttattttcta 681
Query: 482 cagatttctgccacaaatgaatctaagtactacctaatcagaacacttgaaaactccctt 541
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 682 cagatttctgccacaaatgaatctaagtactacctaatcagaacacttaaaaactccctt 741
Query: 542 tagggctatcaggatggctcagcgagtaaagtg 574
|||||||||||||||||||||||||||||||||
Sbjct: 742 tagggctatcaggatggctcagcgagtaaagtg 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_b21.g1 MSMg01no112_b21.g1 CHROMAT_FILE:
MSMg01no112_b21.g1 PHD_FILE: MSMg01no112_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:10 2005
(552 letters)
>mm_chr4_104923345_104924296
Length = 952
Score = 862 bits (446), Expect = 0.0
Identities = 452/454 (99%)
Strand = Plus / Minus
Query: 1 ctgctggactcctttgtctatgtttaacaagaattattaacaggtcacgagactatccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ctgctggactcctttgtctatgtttaacaagaattattaacaggtcacgagactatccta 395
Query: 61 ctgaagagattgtcgggggcagggagcttgaggcttccctcagaggtaggtaggtgtggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgaagagattgtcgggggcagggagcttgaggcttccctcagaggtaggtaggtgtggc 335
Query: 121 cataggccagcttatgggatttgaaagtaatgtataccatttgtcctaacctaaaagaaa 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 334 cataggccagcttatgggatttgaaagtaatgtataccacttgtcctaacctaaaagaaa 275
Query: 181 atggtcagctcttcctttctttgttcgtggtggatagaatacagagtcactggcaggagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 atggtcagctcttcctttctttgttcgtggtggatagaatacagagtcactggcaggagt 215
Query: 241 gccttcagcaagctggtggtggtggtgcacgtctttaatcccagcatccaggaggcagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gccttcagcaagctggtggtggtggtgcacgtctttaatcccagcatccaggaggcagag 155
Query: 301 gcaggtggatatctttgagttcaaggccagccaggtctactgagtgagttcctggactgc 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 154 gcaggtggatatctttgagttcaaggccagccaggtctacagagtgagttcctggactgc 95
Query: 361 caaggctacaacacagagaagccttgtcttaaaaaccaaaccaaaacacacccaaaacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 caaggctacaacacagagaagccttgtcttaaaaaccaaaccaaaacacacccaaaacca 35
Query: 421 accaaacaaaaaacttgcagagccacagaaaagt 454
||||||||||||||||||||||||||||||||||
Sbjct: 34 accaaacaaaaaacttgcagagccacagaaaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
