Query= MSMg01no112_o12.b1 MSMg01no112_o12.b1 CHROMAT_FILE:
MSMg01no112_o12.b1 PHD_FILE: MSMg01no112_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:11 2005
(471 letters)
>mm_chr4_149299553_149300423
Length = 871
Score = 789 bits (408), Expect = 0.0
Identities = 453/468 (96%)
Strand = Plus / Plus
Query: 4 gaattcagtttcctgccccccatgtctggtggttcactagcacccgtaattccagatcca 63
||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 204 gaattcagtttccggcaccccatgtctggtggttcactagcatccgtaattccagatcca 263
Query: 64 gggggcctgatgtcctctctagcatctgtggtactacatacatgtacacacacatataca 123
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 264 gggggcctgatgtcctctctagcatctgtggtactgcatacatgtacacacacatataca 323
Query: 124 ccgttttaaaaataaaaatgttaaaagggccatctattcattcagaatgctttgttttgt 183
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 324 ccgttttaaaaataaaaatgttaaaaggaccatctatccattcagaatgctttgttttgt 383
Query: 184 aaatgcagtcatggtgagaaacactaagaatgactgggtaatcttagaattccacgtggg 243
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 aaatgcagtcatggtgagaaacactaagaatgactgtgtaatcttagaattccacgtggg 443
Query: 244 gcacacatttctaatggctacagctagttctcacctctgtgacaaaatgcctgacaaaag 303
||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcacatatttctaatgtctacagctagttctcacctctgtgacaaaatgcctgacaaaag 503
Query: 304 tgacggggaaagaccgggtcattctggctcacagtttgagggtgcacagtccatcgtgga 363
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgacggggaaagaccggttcgttctggctcacagtttgagggtgcacagtccatcgtgga 563
Query: 364 ggaggaggcacggcgtctgcagtcagcggggagaggaatgctggtaggcagctcactttt 423
||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 ggaggaggcacggcgtctgtagtcagtggggagaggaatgctggtaggcagctcactttc 623
Query: 424 tccttttcaaaaaattatttattgctgtgtgtgtgtgtgtgtgtgtgt 471
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 624 tccttttcaaaaaattatttactgctgtgtgtgtgtgtgtgtgtgtgt 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no112_o12.g1 MSMg01no112_o12.g1 CHROMAT_FILE:
MSMg01no112_o12.g1 PHD_FILE: MSMg01no112_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:11 2005
(455 letters)
>mm_chr4_149468314_149469167
Length = 854
Score = 818 bits (423), Expect = 0.0
Identities = 447/457 (97%), Gaps = 5/457 (1%)
Strand = Plus / Minus
Query: 1 ctatgatggtcacaggcaggtggctgccctcagaatagcaatgtgctggatgcccgctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctatgatggtcacaggcaggtggctgccctcagaatagcaatgtgctggatgcccgctag 595
Query: 61 aatcaaaccccttgggcatcccagctcagcccctgtgaggaactgttacaaagcggaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aatcaaaccccttgggcatcccagctcagcccctgtgaggaactgttacaaagcggaaca 535
Query: 121 cttttctgtaaggacatccctactcccgcttcacagagttcagtggagaagccgcccact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cttttctgtaaggacatccctactcccgcttcacagagttcagtggagaagccgcccact 475
Query: 181 gctttctttccaaagaacatctgtagcctgtgtccaggccccatcccatcccactaaggg 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 474 gctttctttccaaagaacatctgtagcctgtgtccaggccccagcccatcccactaaggg 415
Query: 241 gcccaggctctaagtgggctccagggatcatttgtgctgtcagctcctcccacaaccaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 gcccaggctctaagtgggctccagggatcatttgtgctgtcagctcctcccacaaccaga 355
Query: 301 tccctatatttcgcagttcctccggatctct--ggaggttggcaactgctgggttgaaaa 358
|||||||||||| |||||||||| ||||||| || |||||||||||||||| |||||
Sbjct: 354 tccctatatttctcagttcctccagatctctccgg---ttggcaactgctgggtagaaaa 298
Query: 359 caaagagggggtcttccttcacccttgtaggcgccaaaaggcagtttctggtttaaggac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 caaagagggggtcttccttcacccttgtaggcgccaaaaggcagtttctggtttaaggac 238
Query: 419 ccagcgtctgtagaaagccttaatagaggaaactcta 455
|||| ||||||||||||||||||||||||||||||||
Sbjct: 237 ccagtgtctgtagaaagccttaatagaggaaactcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 854
Length adjustment: 10
Effective length of query: 445
Effective length of database: 844
Effective search space: 375580
Effective search space used: 375580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
