Query= MSMg01no112_o21.b1 MSMg01no112_o21.b1 CHROMAT_FILE:
MSMg01no112_o21.b1 PHD_FILE: MSMg01no112_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:13 2005
(287 letters)
>mm_chr4_54211130_54211816
Length = 687
Score = 540 bits (279), Expect = e-158
Identities = 285/287 (99%)
Strand = Plus / Minus
Query: 1 caccattttctgctttctccatccagggtttcccctcacttctttgtttttctgaggcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 caccattttctgctttctccatccagggtttcccctcacttctttgtttttctgaggcta 284
Query: 61 tcttctaaggaatatcgtcatataggattggagactagcctgctccattagggcctcata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tcttctaaggaatatcgtcatataggattggagactagcctgctccattagggcctcata 224
Query: 121 ctaatgggactgcatctggccatgacttcactttcaaatattgttgcgtcctaaggcact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ctaatgggactgcatctggccatgacttcactttcaaatattgttgcgtcctaaggcact 164
Query: 181 gtgagctagggcttcaaattattattctgttggggcgggagatacaatttaactcgtgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gtgagctagggcttcaaattattattctgttggggcgggagatacaatttaactcgtgaa 104
Query: 241 aaagatgtttggctataatcaaactgagtaatcatactattgcacac 287
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 103 aaagatgtaaggctataatcaaactgagtaatcatactattgcacac 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no112_o21.g1 MSMg01no112_o21.g1 CHROMAT_FILE:
MSMg01no112_o21.g1 PHD_FILE: MSMg01no112_o21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:13 2005
(340 letters)
>mm_chr4_54082291_54083030
Length = 740
Score = 590 bits (305), Expect = e-173
Identities = 332/341 (97%), Gaps = 1/341 (0%)
Strand = Plus / Plus
Query: 1 catgacagcagatgtgaagggaacacactctgattattttatatcacttagctctatgtt 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgacaggagatgtgaagggaacacactctgattattttatatcacttagctctatgtt 260
Query: 61 ctgtcctaccttgtaaatatgttcagaaatttaataagacaatatctccatgaagtatac 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 261 ctgtcctaccttgtaaatatgttcagaaatttaataagacaatatcttcatgaagtagac 320
Query: 121 tgtggtttcacataggtgccccatgttgggcgccaactagggacctgagttctgctttct 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtggttacacataggtgccccatgttgggcgccaactagggacctgagttctgctttct 380
Query: 181 ccgtcagggtgtccagatactactggacactgggctggaaggatgaagtagtgcccagag 240
|| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 ccctcagggtgtccagatgctactggacactgggctggaaggatgaagtagtgtccagag 440
Query: 241 taggtgaggttttcaagatcctagtcttgggggactgctgggggagggggg-aaaggcct 299
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 taggtgaggtcttcaagatcctagtcttgggggactgctgggggagggggggaaaggcct 500
Query: 300 tcttcaaggatttaatgttatagctcttttagagggcattc 340
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcaaggatttaatgttatagctcttttagagggcattc 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space: 241961
Effective search space used: 241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
