BAC Information

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BAC

Clone NameMSMg01-112P03
Chromosome4 (Build37)
Map Location 64,710,704 - 64,711,311
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genePappa, Astn2, Trim32
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112P03.T7 (MSMg01no112_p03.b1)MSMg01-112P03.TJ (MSMg01no112_p03.g1)
ACCAG325219AG325220
length789730
length of high quality
(start - end)
610 (107 - 716)545 (76 - 620)
definitionCHROMAT_FILE: MSMg01no112_p03.b1 PHD_FILE: MSMg01no112_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:14 2005CHROMAT_FILE: MSMg01no112_p03.g1 PHD_FILE: MSMg01no112_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCCCTGCCTGCCCCGTTTTTTTATGGGGGCCNCCCCNNCCCCCCGCACAA
CNNNCNACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGCCGCGGAATTCAGGGCTCTTGCTCAAAAAGGGTATATGTGTCAAAAT
TGTATTTTGAAAGGAGTCCATGAGAAGTGGTAAGTTACTTCACAAAAAGA
CTAGTAAAATTTATAGCTCTATACAATAATGTAATTTTCATTCCTACAAG
ATTCTAATATTGGGCAATATTGTGCTGGAAAGTGATAGAAACAAGGATGG
GAAGCAATCCACAGGATGGATTATTTTTACAATCAGGTGTAGTGCTGAGT
ATATCTGTTCAGCAAATCATTTTGTTCATTATTTTGTAAGGTTTGCTTTC
ATCTCTGAATACTTCATGGGTCTCATCTTGCTAACTAGAAAAAACTTTGA
AGACGTGGATATTGTAGAGAGAAAGGTGTGCTCTTTTGTGTTATGAAGCC
TGAGCCGGCATTCTTGTCCTTAAAGGATTCAGTGTCCACCTTTGGAGGTA
ACTGTATAACTGCCCCAGGATTATAAGGTCTGGAAATGTTTCTCATAGAG
CACAGAAGCTCCCCTTCTATATTTTACCACTTTTTTCCCATCTAATTTTT
CTTTAGATCATAAGTTACTTGAGTATATATGTAAAGCTTGTAGCTTTAGG
GCAAAGTTTGAAAAAAAATTTTTTTTTGATTCATAGGATAGTATAATCAG
CTTCCAGACCACTGAGGTAAAAATTGGTCATTGCACTTG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTGGGCCTCACAGAGACTTAATCA
GGGAGCCTGTATGACCTGATATAGGTCTTTTGCACATGTTATGGTTGTTT
AGCTTGGTGTTATTGTGCAACTCCCAACAGTGGGAGCAGAGGCTGTCTCT
GATTATTTTGACCATTTTTTGAGGCCTTTATTTGTCCTACTGGGTTGCCT
CACCCAGTCTTGCTATGAGGTTATGTGGCTTACCTTATTGTACCGTGTTA
TGCCATGTTCACTTGATATCTCGTGGAGACCTGTTCTTTTCTGAAGGGAA
ACAGGAGTGGATCTGGAGAAGAGGAGACATGGGAAGGTGAGCCTAGGAGG
AGATGATGGAAAGGAAACTGCAGTTGGGATTTATTTAATCCATGAAAGAA
TAAATAAAATAATTTTCAAGGGCAAAATAATAGCAGTCAACAGTATTGAT
ATCATCAAGGTATAAACTGAAATTTGGGAGGAAATATTTACACACCATGC
ATTTGATAAGGGGTTAATCCAAAATTCTTAAAGAATCAAAGCAGTCTCAC
AAGCAAGATTCTAAAGTGAGTAAATGGTCTTCAGTTATAGTTCTCCAAAG
AAGCCATATACAATCCTCAGGTGTATAAAAAGATTCCCACCACTACCCTC
GAGGGAGCTGGAGTCAAAATACTAAGAGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_p03.b1 MSMg01no112_p03.b1 CHROMAT_FILE:
MSMg01no112_p03.b1 PHD_FILE: MSMg01no112_p03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:14 2005
         (610 letters)



>mm_chr4_64710502_64711511
          Length = 1010

 Score = 1038 bits (537), Expect = 0.0
 Identities = 591/609 (97%), Gaps = 2/609 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcagggctcttgctcaa-aaagggtatatgtgtcaaaattgtattttgaaaggagt 61
           ||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 810 gaattcagggctcatg-ttaagaaagggtatatgtgtcaaaattgtattttgaaaggagt 752

                                                                       
Query: 62  ccatgagaagtggtaagttacttcacaaaaagactagtaaaatttatagctctatacaat 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ccatgagaagtggtaagttacttcacaaaaagactagtaaaatttatagctctatacaat 692

                                                                       
Query: 122 aatgtaattttcattcctacaagattctaatattgggcaatattgtgctggaaagtgata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aatgtaattttcattcctacaagattctaatattgggcaatattgtgctggaaagtgata 632

                                                                       
Query: 182 gaaacaaggatgggaagcaatccacaggatggattatttttacaatcaggtgtagtgctg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaaacaaggatgggaagcaatccacaggatggattatttttacaatcaggtgtagtgctg 572

                                                                       
Query: 242 agtatatctgttcagcaaatcattttgttcattattttgtaaggtttgctttcatctctg 301
           ||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||||||
Sbjct: 571 agtatatctgttcagcaaatcattttgttcattatctggcaagttttgctttcatctctg 512

                                                                       
Query: 302 aatacttcatgggtctcatcttgctaactagaaaaaactttgaagacgtggatattgtag 361
           ||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||
Sbjct: 511 aatacttcatgggtctcatcttggtaactagaaaaaactttgaagatgtcgagattgtag 452

                                                                       
Query: 362 agagaaaggtgtgctcttttgtgttatgaagcctgagccggcattcttgtccttaaagga 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 agagaaaggtgtgctcttttgtgttatgaagcctgagccggcattcttgtccttaaagga 392

                                                                       
Query: 422 ttcagtgtccacctttggaggtaactgtataactgccccaggattataaggtctggaaat 481
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 391 ttcagtgtccacctttggaggtaactgtataactgccccaggatcataaggtctggaaat 332

                                                                       
Query: 482 gtttctcatagagcacagaagctccccttctatattttaccacttttttcccatctaatt 541
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gtttctcatagagcatagaagctccccttctatattttaccacttttttcccatctaatt 272

                                                                       
Query: 542 tttctttagatcataagttacttgagtatatatgtaaagcttgtagctttagggcaaagt 601
           ||| |||||||  ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tttgtttagattgtaagtcacttgagtatatatgtaaagcttgtagctttagggcaaagt 212

                    
Query: 602 ttgaaaaaa 610
           |||||||||
Sbjct: 211 ttgaaaaaa 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)