BAC Information

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BAC

Clone NameMSMg01-113B02
Chromosome4 (Build37)
Map Location 39,016,983 - 39,017,505
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039448, LOC665520, LOC100039487
Downstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113B02.T7 (MSMg01no113_b02.b1)MSMg01-113B02.TJ (MSMg01no113_b02.g1)
ACCAG325309AG325310
length705707
length of high quality
(start - end)
662 (39 - 700)616 (69 - 684)
definitionCHROMAT_FILE: MSMg01no113_b02.b1 PHD_FILE: MSMg01no113_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:24 2005CHROMAT_FILE: MSMg01no113_b02.g1 PHD_FILE: MSMg01no113_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
AGAAAGCCCAAGAAAAACATATACAATATGGCTCAAGTGAAACATACCTT
GACATATTCCCCTAAAAGTCTGGATATTCTATTACCATAATATTTCCTCA
TCCAAATCCATTCACAAGGGCCAGCAAACACAAACACCTCAGGTGTCTTT
GAGCTGATGGTTGGATGATGGAAACATAGTGAATGTGTACAATGGAATTA
TATTTAACTGCAAATAAAGATAAAATCATGCAATTTCACTAAAACTGTGG
AACTAAAACATTATACTGAGTGAGGTAGCCCAGGCCCAGAAAAACAAACA
TAACTTTTCTCATCTTTGTGGGCCCTAGCTGTGATTCTTTAAATTTGAAT
ATGTAACTTGGAGTAAATAAAGAAGTCAGGAAATTGGGAAGGGACCATGG
TGGTGGTAAATAGGAAACAGTGGGCTGTGTGTACTATGACAGGAATGAGA
AGAAAGATAGTGAGGAGTGATTAACAGCAGACAGGGAAAGGGCAAATAAG
ACAAAAGATATCAATAACAGTAAACATGTTTGAAAATGCCAAAGGAAATC
CTAGTATTTATAAGCATATGTAACACACACACACACACACACACACAAAA
TCAAACGTTATACCATTTGGGGTAACAATATTTCCCAAAGGGCTATAAAG
TACAA
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAAC
TCAGGTGACAGCAGATGCTGGCGAGGATATGGAGAAAGGGGAACACTCCT
CCATTATTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCT
GGCAGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCTGCAATA
CCTCTCCTGGGTATATATCCAGAAGATGTCCCAACCGGTAAGAAGAATAC
AGGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATTTACACAATGGAATACTACTCAGCTATTAAAAAATGAATTTATGAAAT
TCCTAGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACC
CAATCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATATTA
GCCCAGAAACTTAGGATACCCAAGATATAAGATACGACTTGCCAAACGCA
TGAAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_b02.b1 MSMg01no113_b02.b1 CHROMAT_FILE:
MSMg01no113_b02.b1 PHD_FILE: MSMg01no113_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:24 2005
         (662 letters)



>mm_chr4_39016444_39017505
          Length = 1062

 Score =  949 bits (491), Expect = 0.0
 Identities = 517/529 (97%), Gaps = 6/529 (1%)
 Strand = Plus / Minus

                                                                        
Query: 133  ccagcaaacacaaacacctcaggtgtctttgagctgatggttggatgatggaaacatagt 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 ccagcaaacacaaacacctcaggtgtctttgagctgatggttggatgatggaaacatagt 1003

                                                                        
Query: 193  gaatgtgtacaatggaattatatttaactgcaaataaagataaaatcatgcaatttcact 252
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 gcatgtgtacaatggaattatatttaactgcaaataaagataaaatcatgcaatttcact 943

                                                                        
Query: 253  aaaactgtggaactaaaacattatactgagtgaggtagcccaggcccagaaaaacaaaca 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942  aaaactgtggaactaaaacattatactgagtgaggtagcccaggcccagaaaaacaaaca 883

                                                                        
Query: 313  taacttttctcatctttgtgggccctagctgtgattctttaaatttgaatatgtaacttg 372
            |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 882  taacttttctcatctttgtgagccctagctgtgattctttaaatttgaatatttaacttg 823

                                                                        
Query: 373  gagtaaataaagaagtcaggaaattgggaagggaccatggtggtggtaaataggaaacag 432
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 822  gagtaaataaagaagtcaggaaattgggaagggaccatggtgttggtaaataggaaacag 763

                                                                        
Query: 433  tgggctgtgtgtactatgacaggaatgagaagaaagatagtgaggagtgattaacagcag 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762  tgggctgtgtgtactatgacaggaatgagaagaaagatagtgaggagtgattaacagcag 703

                                                                        
Query: 493  acagggaaagggcaaataagacaaaagatatcaataacagtaaacatgtttgaaaatgcc 552
            |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 702  acagggaaagggcaaataagacaatagatatcaataacagtaaacatgtttgtaaatgcc 643

                                                                        
Query: 553  aaaggaaatcctagtatttataagcatatgtaacacacacacacacacacacacacaaaa 612
            |||||||||||||||||||||||||||||||||||||||||||||||||||||      |
Sbjct: 642  aaaggaaatcctagtatttataagcatatgtaacacacacacacacacacaca------a 589

                                                             
Query: 613  tcaaacgttataccatttggggtaacaatatttcccaaagggctataaa 661
            |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588  tcaaacgttataccatttggggtaacaatatttcccaaagggctataaa 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)