MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-113C19
Chromosome	4 (Build37)
Map Location	128,412,280 - 128,412,744
singlet/doublet	singlet
Overlap gene	Phc2
Upstream gene	LOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12
Downstream gene	A3galt2, BC039093, LOC667354, Trim62, Adc, Ak2, Ibrdc3, Tmem54, Hpca, Fndc5, S100pbp, Yars, C77080, Sync, Rbbp4, Zbtb8os, 2410081M15Rik, LOC100039588, Zbtb8, Bsdc1, Tssk3, 1700125D06Rik, Marcksl1, Hdac1, Lck, BC030183, Eif3s2, 2510006D16Rik, LOC667452, Iqcc, Ccdc28b, Txlna, Kpna6, Tmem39b, Khdrbs1
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC635169 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:635169
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	4930465A12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74989 MGI:1922239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Hmgb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69317 MGI:1916567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930546G22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75242 MGI:1922492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Zscan20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269585 MGI:2679268
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384059 MGI:3045221
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54383 MGI:1860454
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A3galt2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215493 MGI:2685279
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC039093 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230761 MGI:2652839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667354 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins pseudo : _no_value

name	Trim62 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67525 MGI:1914775
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242669 MGI:2442093
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ak2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11637 MGI:87978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Ibrdc3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75234 MGI:1922484
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 83 ESTs, 5 Proteins

name	Tmem54 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66260 MGI:1913510
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hpca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15444 MGI:1336200
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fndc5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384061 MGI:1917614
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	S100pbp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74648 MGI:1921898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Yars (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107271 MGI:2147627
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C77080 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97130 MGI:2140651
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sync (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68828 MGI:1916078
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbbp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19646 MGI:1194912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb8os (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67106 MGI:1914356
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2410081M15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73680 MGI:1920930
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039588 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039588
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Zbtb8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:215627 MGI:2387181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Bsdc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100383 MGI:1913466
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tssk3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58864 MGI:1929914
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700125D06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68233 MGI:1915483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 14 ESTs

name	Marcksl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17357 MGI:97143
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hdac1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433759 MGI:108086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lck (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16818 MGI:96756
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC030183 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230766 MGI:2668032
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eif3s2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54709 MGI:1860763
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2510006D16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76799 MGI:1924049
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667452 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667452
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins

name	Iqcc (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230767 MGI:2446212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccdc28b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66264 MGI:1913514
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Txlna (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109658 MGI:105968
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kpna6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16650 MGI:1100836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmem39b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:230770 MGI:2682939
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Khdrbs1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20218 MGI:893579
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC635169 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253103 GeneID:635169
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical LOC635169 transcript_id : XM_989799.2

name	4930465A12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372497 GeneID:74989 MGI:1922239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930465A12 gene transcript_id : XM_897643.2

name	Hmgb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367390 GeneID:69317 MGI:1916567
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : high-mobility group box 4 transcript_id : NM_027036.2

name	4930546G22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253120 GeneID:75242 MGI:1922492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930546G22 gene transcript_id : XM_001474811.1

name	Zscan20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41054997 GeneID:269585 MGI:2679268
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and SCAN domains 20 transcript_id : NM_177758.3

name	Tlr12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45430000 GeneID:384059 MGI:3045221
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 12 transcript_id : NM_205823.1

name	Phc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375739 GeneID:54383 MGI:1860454
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polyhomeotic-like 2 (Drosophila) transcript_id : NM_018774.2

name	A3galt2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78486564 GeneID:215493 MGI:2685279
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) transcript_id : NM_001009819.2

name	BC039093 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487368 GeneID:230761 MGI:2652839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC039093 transcript_id : NM_001081098.1

name	Trim62 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342487 GeneID:67525 MGI:1914775
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tripartite motif-containing 62 transcript_id : NM_178110.2

name	Adc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344110 GeneID:242669 MGI:2442093
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : arginine decarboxylase transcript_id : NM_172875.2

name	Ak2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803229 GeneID:11637 MGI:87978
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate kinase 2 transcript_id : NM_001033966.2

name	Ak2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131139 GeneID:11637 MGI:87978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenylate kinase 2 transcript_id : NM_016895.3

name	Ibrdc3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253106 GeneID:75234 MGI:1922484
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 83 ESTs, 5 Proteins product : IBR domain containing 3 transcript_id : XM_204030.6

name	Tmem54 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384079 GeneID:66260 MGI:1913510
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 54 transcript_id : NM_025452.3

name	Hpca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40254583 GeneID:15444 MGI:1336200
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hippocalcin transcript_id : NM_010471.2

name	Fndc5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47087147 GeneID:384061 MGI:1917614
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : fibronectin type III domain containing 5 transcript_id : NM_027402.2

name	S100pbp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801813 GeneID:74648 MGI:1921898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : S100P binding protein transcript_id : NM_029036.2

name	Yars (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351106 GeneID:107271 MGI:2147627
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tyrosyl-tRNA synthetase transcript_id : NM_134151.3

name	C77080 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361970 GeneID:97130 MGI:2140651
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence C77080 transcript_id : NM_001033189.2

name	Sync (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47059477 GeneID:68828 MGI:1916078
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : syncoilin transcript_id : NM_023485.3

name	Rbbp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130570 GeneID:19646 MGI:1194912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retinoblastoma binding protein 4 transcript_id : NM_009030.3

name	Zbtb8os (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369625 GeneID:67106 MGI:1914356
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 8 opposite strand transcript_id : NM_025970.2

name	2410081M15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802229 GeneID:73680 MGI:1920930
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410081M15 gene transcript_id : NM_028603.2

name	Zbtb8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377519 GeneID:215627 MGI:2387181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 8 transcript_id : NM_153541.3

name	Bsdc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981602 GeneID:100383 MGI:1913466
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : BSD domain containing 1 transcript_id : NM_133889.2

name	Tssk3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54144643 GeneID:58864 MGI:1929914
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : testis-specific serine kinase 3 transcript_id : NM_080442.2

name	1700125D06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253108 GeneID:68233 MGI:1915483
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 14 ESTs product : RIKEN cDNA 1700125D06 gene transcript_id : XM_485446.4

name	Marcksl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130156 GeneID:17357 MGI:97143
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : MARCKS-like 1 transcript_id : NM_010807.3

name	Hdac1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130866 GeneID:433759 MGI:108086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone deacetylase 1 transcript_id : NM_008228.2

name	Lck (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372058 GeneID:16818 MGI:96756
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lymphocyte protein tyrosine kinase transcript_id : NM_010693.2

name	BC030183 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:33354246 GeneID:230766 MGI:2668032
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC030183 transcript_id : NM_182783.1

name	Eif3s2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9055369 GeneID:54709 MGI:1860763
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 3, subunit 2 (beta) transcript_id : NM_018799.1

name	2510006D16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802797 GeneID:76799 MGI:1924049
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2510006D16 gene transcript_id : NM_029748.2

name	LOC667452 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372530 GeneID:667452
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 3 Proteins product : similar to Doublecortin domain containing 2B transcript_id : XM_990619.1

name	Iqcc (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124126982 GeneID:230767 MGI:2446212
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : IQ motif containing C transcript_id : NM_198026.2

name	Ccdc28b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70887805 GeneID:66264 MGI:1913514
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled coil domain containing 28B transcript_id : NM_025455.2

name	Txlna (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:91598585 GeneID:109658 MGI:105968
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : taxilin alpha transcript_id : NM_001005506.2

name	Kpna6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364978 GeneID:16650 MGI:1100836
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : karyopherin (importin) alpha 6 transcript_id : NM_008468.3

name	Tmem39b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40556283 GeneID:230770 MGI:2682939
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 39b transcript_id : NM_199305.1

name	Khdrbs1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626030 GeneID:20218 MGI:893579
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : KH domain containing, RNA binding, signal transduction associated 1 transcript_id : NM_011317.3

name	LOC635169 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253104 GeneID:635169
definition	codon_start : 1 product : hypothetical protein protein_id : XP_994893.2

name	4930465A12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895170 GeneID:74989 MGI:1922239
definition	codon_start : 1 product : hypothetical protein LOC74989 protein_id : XP_902736.1

name	Hmgb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312264 CCDS:CCDS18671.1 GeneID:69317 MGI:1916567
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 exception : mismatches in translation product : high-mobility group box 4 protein_id : NP_081312.1

name	4930546G22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253121 GeneID:75242 MGI:1922492
definition	codon_start : 1 product : hypothetical protein LOC75242 protein_id : XP_001474861.1

name	Zscan20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244254 CCDS:CCDS18672.1 GeneID:269585 MGI:2679268
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : zinc finger with KRAB and SCAN domains 20 product : zinc finger protein 31 protein_id : NP_808426.1

name	Tlr12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45430001 CCDS:CCDS18673.1 GeneID:384059 MGI:3045221
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 product : toll-like receptor 12 protein_id : NP_991392.1

name	Phc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055280 CCDS:CCDS18674.1 GeneID:54383 MGI:1860454
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0031519 - PcG protein complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 note : polyhomeotic 2 protein; early development regulator 2 (homolog of polyhomeotic 2) product : polyhomeotic-like 2 protein_id : NP_061244.1

name	A3galt2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:57528488 CCDS:CCDS18675.1 GeneID:215493 MGI:2685279
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0001962 - alpha-1,3-galactosyltransferase activity [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]; GO:0016758 - transferase activity, transferring hexosyl groups [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006688 - glycosphingolipid biosynthesis [Evidence ISS] codon_start : 1 note : iGb3 synthase; galactosyltransferase product : alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase) protein_id : NP_001009819.1

name	BC039093 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487369 GeneID:230761 MGI:2652839
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : novel protein containing Zinc finger, C2H2 type domains product : hypothetical protein LOC230761 protein_id : NP_001074567.1

name	Trim62 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017451 CCDS:CCDS18677.1 GeneID:67525 MGI:1914775
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : tripartite motif-containing 62 protein_id : NP_835211.1

name	Adc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370330 CCDS:CCDS18678.1 GeneID:242669 MGI:2442093
definition	GO_function : GO:0008792 - arginine decarboxylase activity [Evidence IEA]; GO:0016831 - carboxy-lyase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] GO_process : GO:0007283 - spermatogenesis [Evidence ISS] codon_start : 1 note : novel protein containing a Pyridoxal-dependent decarboxylase, pyridoxal binding domain (likely ortholog of H. sapiens ornithine decarboxylase-like) product : ornithine decarboxylase-like protein protein_id : NP_766463.1

name	Ak2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328230 CCDS:CCDS18679.1 GeneID:11637 MGI:87978
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004017 - adenylate kinase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0019201 - nucleotide kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : adenylate kinase 2 isoform b protein_id : NP_058591.2

name	Ak2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77020262 CCDS:CCDS18680.1 GeneID:11637 MGI:87978
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0004017 - adenylate kinase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0019201 - nucleotide kinase activity [Evidence IEA]; GO:0016776 - phosphotransferase activity, phosphate group as acceptor [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : adenylate kinase 2 isoform a protein_id : NP_001029138.1

name	Ibrdc3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253107 GeneID:75234 MGI:1922484
definition	codon_start : 1 product : IBR domain containing 3 protein_id : XP_204030.6

name	Tmem54 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20270299 CCDS:CCDS18681.1 GeneID:66260 MGI:1913510
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : beta-casein-like protein protein_id : NP_079728.2

name	Hpca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754240 CCDS:CCDS18682.1 GeneID:15444 MGI:1336200
definition	GO_function : GO:0003779 - actin binding [Evidence ISS]; GO:0005509 - calcium ion binding [Evidence ISS] codon_start : 1 product : hippocalcin protein_id : NP_034601.1

name	Fndc5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059145 CCDS:CCDS18683.1 GeneID:384061 MGI:1917614
definition	GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 note : peroxisomal protein product : fibronectin type III domain containing 5 protein_id : NP_081678.1

name	S100pbp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62899073 CCDS:CCDS18684.1 GeneID:74648 MGI:1921898
definition	codon_start : 1 product : S100P binding protein protein_id : NP_083312.1

name	Yars (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981647 CCDS:CCDS18685.1 GeneID:107271 MGI:2147627
definition	GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]; GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : tyrosyl-tRNA synthetase protein_id : NP_598912.2

name	C77080 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677516 CCDS:CCDS18686.1 GeneID:97130 MGI:2140651
definition	codon_start : 1 product : hypothetical protein LOC97130 protein_id : NP_001028361.1

name	Sync (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059478 CCDS:CCDS18687.1 GeneID:68828 MGI:1916078
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005829 - cytosol [Evidence IDA]; GO:0005882 - intermediate filament [Evidence ISS]; GO:0042383 - sarcolemma [Evidence IDA]; GO:0045202 - synapse [Evidence IDA]; GO:0030018 - Z disc [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0045103 - intermediate filament-based process [Evidence IDA] codon_start : 1 product : syncoilin protein_id : NP_075974.3

name	Rbbp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059484 CCDS:CCDS18688.1 GeneID:19646 MGI:1194912
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]; GO:0016581 - NuRD complex [Evidence IDA] GO_function : GO:0008094 - DNA-dependent ATPase activity [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0016568 - chromatin modification [Evidence IEA]; GO:0006338 - chromatin remodeling [Evidence ISS] [Evidence TAS]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : CAF-1 p48 subunit product : retinoblastoma binding protein 4 protein_id : NP_033056.2

name	Zbtb8os (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21746142 CCDS:CCDS18689.1 GeneID:67106 MGI:1914356
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : archease; archease (Arch) product : zinc finger and BTB domain containing 8 opposite strand protein_id : NP_080246.1

name	2410081M15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312080 CCDS:CCDS18690.1 GeneID:73680 MGI:1920930
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 note : novel protein similar to zinc finger and BTB domain containing 8 product : zinc finger and BTB domain containing 8 protein_id : NP_082879.1

name	Zbtb8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625944 CCDS:CCDS18691.1 GeneID:215627 MGI:2387181
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : zinc finger and BTB domain containing 8 protein_id : NP_705769.2

name	Bsdc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981603 CCDS:CCDS18692.1 GeneID:100383 MGI:1913466
definition	codon_start : 1 product : BSD domain containing 1 protein_id : NP_598650.2

name	Tssk3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21426825 CCDS:CCDS18693.1 GeneID:58864 MGI:1929914
definition	GO_component : GO:0005622 - intracellular [Evidence IC] GO_function : GO:0005524 - ATP binding [Evidence IEA] [Evidence ISS]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA] [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence TAS] [Evidence ISS] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007242 - intracellular signaling cascade [Evidence NAS]; GO:0006468 - protein amino acid phosphorylation [Evidence ISS] [Evidence IEA]; GO:0048240 - sperm capacitation [Evidence NAS]; GO:0007283 - spermatogenesis [Evidence IEP] [Evidence ISS] [Evidence IEA] codon_start : 1 note : testis specific serine kinase-3; spermiogenesis associated serine/threonine kinase 22D; testis-specific serine/threonine kinase 3b; testis-specific kinase 3; serine/threonine kinase 22C (spermiogenesis associated) product : spermiogenesis associated serine/threonine kinase 22C protein_id : NP_536690.1

name	1700125D06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51709474 GeneID:68233 MGI:1915483
definition	codon_start : 1 product : hypothetical protein LOC68233 protein_id : XP_485446.1

name	Marcksl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754706 CCDS:CCDS18695.1 GeneID:17357 MGI:97143
definition	GO_function : GO:0005516 - calmodulin binding [Evidence IEA] codon_start : 1 product : MARCKS-like protein protein_id : NP_034937.1

name	Hdac1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680193 CCDS:CCDS18696.1 GeneID:433759 MGI:108086
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0000792 - heterochromatin [Evidence IDA]; GO:0000118 - histone deacetylase complex [Evidence IPI]; GO:0005634 - nucleus [Evidence TAS] [Evidence IEA] [Evidence IDA]; GO:0016581 - NuRD complex [Evidence IPI] GO_function : GO:0004407 - histone deacetylase activity [Evidence IEA] [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008134 - transcription factor binding [Evidence TAS] GO_process : GO:0016568 - chromatin modification [Evidence IEA] [Evidence TAS]; GO:0007492 - endoderm development [Evidence IMP] [Evidence IDA]; GO:0016575 - histone deacetylation [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : histone deacetylase 1 protein_id : NP_032254.1

name	Lck (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859570 CCDS:CCDS18697.1 GeneID:16818 MGI:96756
definition	GO_component : GO:0045121 - lipid raft [Evidence ISS]; GO:0016020 - membrane [Evidence IEA]; GO:0000242 - pericentriolar material [Evidence ISS]; GO:0005886 - plasma membrane [Evidence ISS] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence ISS]; GO:0004713 - protein-tyrosine kinase activity [Evidence ISS] [Evidence IEA]; GO:0042169 - SH2 domain binding [Evidence ISS]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006919 - caspase activation [Evidence ISS]; GO:0030097 - hemopoiesis [Evidence ISS]; GO:0006917 - induction of apoptosis [Evidence ISS]; GO:0007242 - intracellular signaling cascade [Evidence ISS] [Evidence IEA]; GO:0050870 - positive regulation of T cell activation [Evidence ISS]; GO:0050862 - positive regulation of T cell receptor signaling pathway [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] [Evidence ISS]; GO:0007265 - Ras protein signal transduction [Evidence ISS]; GO:0051249 - regulation of lymphocyte activation [Evidence ISS]; GO:0000074 - regulation of progression through cell cycle [Evidence ISS]; GO:0050856 - regulation of T cell receptor signaling pathway [Evidence IDA]; GO:0051209 - release of sequestered calcium ion into cytosol [Evidence IDA]; GO:0042493 - response to drug [Evidence ISS]; GO:0030217 - T cell differentiation [Evidence ISS]; GO:0006882 - zinc ion homeostasis [Evidence ISS] codon_start : 1 product : lymphocyte protein tyrosine kinase protein_id : NP_034823.1

name	BC030183 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33354247 GeneID:230766 MGI:2668032
definition	codon_start : 1 product : hypothetical protein LOC230766 protein_id : NP_877584.1

name	Eif3s2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9055370 CCDS:CCDS18698.1 GeneID:54709 MGI:1860763
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003743 - translation initiation factor activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006412 - protein biosynthesis [Evidence IEA] codon_start : 1 note : TGF-beta receptor binding protein; eukaryotic translation initiation factor 3, subunit 2 (beta, 36kD) product : eukaryotic translation initiation factor 3, subunit 2 (beta) protein_id : NP_061269.1

name	2510006D16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22267454 CCDS:CCDS18699.1 GeneID:76799 MGI:1924049
definition	codon_start : 1 product : hypothetical protein LOC76799 protein_id : NP_084024.1

name	LOC667452 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:94372531 GeneID:667452
definition	codon_start : 1 product : similar to Doublecortin domain containing 2B protein_id : XP_995713.1

name	Iqcc (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124126983 GeneID:230767 MGI:2446212
definition	codon_start : 1 product : IQ motif containing C protein_id : NP_932143.2

name	Ccdc28b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70887806 CCDS:CCDS18700.1 GeneID:66264 MGI:1913514
definition	codon_start : 1 product : coiled coil domain containing 28B protein_id : NP_079731.2

name	Txlna (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:91598586 GeneID:109658 MGI:105968
definition	GO_component : GO:0005615 - extracellular space [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0006887 - exocytosis [Evidence IEA] codon_start : 1 note : taxilin; interleukin 14; taxilin Txln product : taxilin alpha protein_id : NP_001005506.2

name	Kpna6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370260 CCDS:CCDS18701.1 GeneID:16650 MGI:1100836
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008565 - protein transporter activity [Evidence IDA] GO_process : GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0006606 - protein import into nucleus [Evidence IDA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : mismatches in translation note : karyopherin (importin) alpha 5 product : karyopherin (importin) alpha 6 protein_id : NP_032494.2

name	Tmem39b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40556284 CCDS:CCDS18702.1 GeneID:230770 MGI:2682939
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : transmembrane protein 39b protein_id : NP_955009.1

name	Khdrbs1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626031 CCDS:CCDS18703.1 GeneID:20218 MGI:893579
definition	GO_component : GO:0016020 - membrane [Evidence ISS]; GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003723 - RNA binding [Evidence ISS] [Evidence IEA] [Evidence IDA]; GO:0005070 - SH3/SH2 adaptor activity [Evidence IPI]; GO:0016564 - transcriptional repressor activity [Evidence IDA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0007166 - cell surface receptor linked signal transduction [Evidence IDA]; GO:0016481 - negative regulation of transcription [Evidence IDA]; GO:0046831 - regulation of RNA export from nucleus [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : src associated in mitosis, 68 kDa product : KH domain containing, RNA binding, signal transduction associated 1 protein_id : NP_035447.3

name	LOC100039588 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039588
definition	number : 1 pseudo : _no_value

name	LOC100039588 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039588
definition	number : 2 pseudo : _no_value

name	LOC667354 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253105 GeneID:667354
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 7 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudo : _no_value transcript_id : XR_031034.1

clone name	MSMg01-405N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-139C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-337M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-175N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515I19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452O12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-160I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434N22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-508C24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346D21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-503I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334E19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-473O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-384C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506M16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-395L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-214C10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173K12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068N10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331A05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314K07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214D03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-243H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-206M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131A22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040I02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185M22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184O24
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-113C19.T7 (MSMg01no113_c19.b1)	MSMg01-113C19.TJ (MSMg01no113_c19.g1)
ACC	AG325389	AG325390
length	703	793
length of high quality (start - end)	418 (63 - 480)	---
definition	CHROMAT_FILE: MSMg01no113_c19.b1 PHD_FILE: MSMg01no113_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:32 2005	CHROMAT_FILE: MSMg01no113_c19.g1 PHD_FILE: MSMg01no113_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:32 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CTATATTTGCGGCGCTAAACGACTACTATATCCAGAAGACCGCGGAATTC TAAAAAGTTACCTGTAACTTGTGCCATCTGCATGGGAGATGCATGTGTGG TCATTGTCTAAATTTAGTGTAAAACTTGGTGGGAGAAATGACTCATCCTA AATTGTAGGTGTGGGAGATGTGCCATTAACTAATGGTGTGTTAGGCCTGT TGAAAGATCATGTGCTACTTCCCTTTTGACTGGGATGCAGAGCGCAGCCT GGATCCTGCCTGCCCTGCTCCTTTTCCTATTAGTCCACGGTTGCCAGTTC CCTACCCTGAGGTCCCAGACCACAGGTGACGCCTCAGCCTCCTTGTCATT TCCTGCCACCTGCCTCAAGTGCCCTCACACTGGTCCCAGCTAGTCACGCA CAGCCCTCCCCTCCCTACCTGCTTCACCCTCGTAGCCCACTGCAGGGAAA TGAAACCGCCTCTGCTCAGGTCTTTCATGATCTTCAGTGTTCTTCATGTT GCTGAGGCGAAACAGGTTACAAGAGCAGCCTAAGGGAAAAGGGCGTGTTT CAGTCACGTGACATAACAGGCATGTTGCCGGGGGCTGGAAGTCCCTGTTT CAACTGTACTGCTGCCAACCCCGATTTCCAGGCGGGGCTTTCCAACTTCC TTAAACCTCTTCTGGAAAAATGTCCATAAAAAGCCCAAAGTTTAACTCAT ACT	TGAAACGAGAGGCCTGGAGACGACTGGTTGCGGACCAGCNTGAACTATAG AAGGTTCCGGAAATCGGATAAGCTCAAACCAAGGCGGCTGGGGTGGGGAG ACTTCACTGTGTACCCTCCCGCTTCCGCTCCGCGTCTCGTCTTGATTGGG GGCAATATCTCTGGGCTGGGTGTTTTAGCTATGGGCAACGTCAAAGCCCC ACATCGCTACAATGCGAGCCCCGTCGACGTGCAAAGTGTGGTAATGTGGG AAATGACGTATTTTTCAACACTTGGACAAATGGTCGTGGTGGATTTGGGC AACCAGCGCTTTTGGTCCATGCGGTAGGCGTATGGGGGCAATTGGATATA TTTTGTGCCACCACATGTCCATTTTGTGTGGAAAGAGACACAAAAAATAC TTTGGATAAATAATTGCGTCATAGGACAATGTTAAAACCGGTGGCCGCCT CAATTTACGGGCACAACTTTGTGGTCTTTGCGCACGCCTGGGTACCTTTA CACCTGCGCCAACGTTTGTGGGGTAGCCAACACGGCTAGTTGAACGCATT TCGTCGACTTCTTTTTTGGAACCTTGTTCCTACTCCCACTTTGCGCTTTT GCCGGTTCCGCACCTTAGTGCCACGGGCCATCCTTGTACATTGCCTTGGC GCGGAACCCTGTGGCGGCCGCCAAATGCGTTGTATAGGGTCGCAAAACGT TGGGTGAGACACAGGGGGCAATAAAAACTAGGTGGAAACAGGCGGCGGGA TGTGTAATATAGAGTCGGTGGCCAATATATGGTGCGGCCCCAC
quality values	Open. Hide. 6 6 6 6 6 23 19 20 24 19 14 14 20 23 22 17 8 8 8 21 21 19 19 9 9 9 19 17 9 9 9 13 11 9 6 8 8 8 8 8 10 12 27 25 33 33 33 48 48 33 33 33 33 23 23 10 9 9 9 9 11 13 19 16 28 28 39 33 33 33 33 36 26 26 21 26 18 24 33 33 33 36 36 31 28 28 28 29 29 42 42 37 36 36 24 24 17 14 20 20 20 22 31 32 42 35 39 39 48 48 48 54 57 57 26 26 11 11 16 24 36 44 47 47 47 44 44 27 24 20 20 20 25 36 44 36 42 38 38 38 42 47 54 57 57 57 54 50 50 57 57 50 50 50 50 50 50 47 42 50 42 36 43 28 29 28 36 23 36 16 16 11 11 11 21 21 57 57 54 52 36 35 18 18 14 23 32 37 57 57 57 57 47 43 35 39 35 43 39 57 57 57 57 57 52 52 52 57 45 39 43 43 43 43 57 57 52 52 43 57 39 35 35 42 59 57 57 57 43 43 24 21 11 18 13 36 36 34 18 43 27 33 33 26 26 12 12 27 33 43 20 24 15 33 33 52 62 62 35 35 43 43 52 62 52 52 52 52 52 52 52 62 62 62 62 62 62 62 62 62 43 33 24 12 12 26 33 43 43 39 35 35 43 43 52 52 57 57 57 57 57 57 57 52 52 57 57 57 43 36 35 20 27 27 43 35 35 35 35 39 39 42 39 39 43 39 43 43 43 42 45 52 52 43 43 29 43 43 57 57 57 57 57 57 57 35 35 37 50 50 52 54 52 57 57 52 52 52 52 52 57 52 52 43 44 35 29 31 35 43 43 37 32 43 43 35 35 31 31 27 32 32 32 20 20 24 28 27 36 36 46 36 36 27 27 27 44 41 47 54 59 59 47 48 48 48 48 57 57 57 59 59 59 57 57 57 54 54 54 59 59 57 57 57 44 44 37 37 43 44 41 33 39 37 30 30 32 37 39 46 39 42 39 37 32 30 30 37 37 37 48 43 43 34 34 23 28 28 33 37 43 39 43 32 32 21 21 11 12 12 12 12 21 26 30 37 36 20 20 12 12 12 22 23 21 11 11 11 13 13 15 20 22 18 13 13 28 28 35 35 35 35 32 32 20 15 13 12 11 10 10 10 10 9 9 12 12 12 16 11 11 11 11 11 11 11 11 11 12 14 19 12 11 16 16 12 11 9 9 9 12 17 28 18 14 14 10 10 10 10 10 11 16 11 13 13 15 24 30 23 23 11 11 11 11 11 11 9 9 9 9 10 10 11 11 10 10 10 11 17 12 9 9 9 9 12 11 10 8 8 8 8 8 9 19 19 11 11 15 12 9 9 11 9 10 6 6 6 6 8 6 6 8 10 11 9 9 9 8 8 8 9 10 15 10 18 12 9 10 11 9 9 7 7 8 8 12 12 8 8 8 10 10 9 10 12 12 8 10 13 8 8 8 9 9 9 9 11 18 18 20 19 23 18 24 17 17 13 8 8 8 10 10 10 8 8 8 8 8 8 9 12 12 14 14 12 14 14 16 23 23 16 16 17 12 12 12 11 11 18 17 11 11	Open. Hide. 8 8 8 8 8 9 9 10 10 10 10 11 11 12 10 12 6 6 8 8 9 9 9 15 17 9 6 6 6 6 6 7 8 8 10 10 11 9 3 0 3 11 12 18 21 30 37 39 39 20 20 11 9 9 9 6 6 6 6 8 10 16 10 10 6 6 6 6 9 9 9 11 8 9 16 23 24 28 33 27 27 13 11 8 8 8 11 12 19 19 14 14 14 14 18 15 15 12 11 11 11 9 9 9 7 8 8 8 11 11 10 9 9 9 11 9 9 8 8 8 8 8 8 14 15 8 8 8 8 8 8 8 8 6 8 7 9 10 11 10 11 8 8 8 8 8 10 12 10 8 6 8 6 6 8 8 8 8 8 8 8 8 10 13 10 11 11 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 12 6 6 8 8 8 8 10 10 8 8 8 10 10 10 10 8 8 8 8 10 8 10 11 11 10 10 10 10 8 8 8 12 10 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 6 6 8 6 9 9 9 8 10 10 8 8 8 8 8 8 8 7 8 8 6 6 7 10 11 9 9 10 8 10 7 6 8 8 11 9 9 9 8 8 6 6 6 8 8 6 6 6 8 8 8 8 8 9 8 8 8 8 8 8 10 10 8 8 8 8 6 6 8 8 8 8 8 8 8 12 12 11 10 9 8 8 8 8 8 8 6 6 8 8 15 8 8 6 6 6 6 10 10 10 11 8 8 6 6 6 6 8 8 8 8 8 12 10 8 8 10 9 11 9 9 8 8 7 6 8 8 9 9 11 11 9 9 8 8 8 8 8 10 12 6 6 6 6 6 6 10 10 10 8 8 8 6 8 8 9 10 10 10 12 12 9 9 9 8 9 9 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 6 6 8 8 8 8 10 8 8 8 10 10 8 8 8 9 9 9 9 9 9 11 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 11 8 9 9 9 9 8 10 10 10 10 8 8 8 8 8 8 6 6 8 8 6 6 8 6 8 8 8 8 9 10 8 8 8 10 8 8 6 6 6 6 8 8 6 7 8 8 8 8 8 10 10 9 9 12 12 11 11 11 11 8 6 6 6 8 6 6 6 8 8 8 8 8 7 6 8 8 8 6 6 8 8 15 12 13 12 9 8 8 8 8 8 9 9 9 9 10 13 10 8 8 8 8 8 8 8 8 8 7 6 8 7 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 10 10 11 11 11 10 9 9 9 6 6 6 6 8 8 7 8 8 9 9 9 9 9 10 10 8 8 7 6 8 8 10 8 8 8 10 17 15 10 9 9 10 10 9 10 9 9 9 9 9 8 8 8 8 8 8 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 9 9 8 8 8 8 9 9 9 9 10 13 11 9 12 11 11 10 10 12 11 13 11 11 10 10 10 10 10 12 12 12 11 9 9 9 8 8 8 8 8 10 8 8 8 8 8 9 9 8 8 8 14 9 9 9 9 8 8 6 6 8 6 8 8 9 8 6 6 6 6 8 6 6 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 9 9 6 8 6 6 6 8 8 9 10 8 10 8 8 8 8 10 8 6 6 6 6 8 6 9 10 9 9 9

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no113_c19.b1 MSMg01no113_c19.b1 CHROMAT_FILE:
MSMg01no113_c19.b1 PHD_FILE: MSMg01no113_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:32 2005
         (418 letters)



>mm_chr4_128412127_128412944
          Length = 818

 Score =  690 bits (357), Expect = 0.0
 Identities = 415/465 (89%), Gaps = 47/465 (10%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtaacttgtgccatctgcatgggagatgcatgtgtggtcattgtctaaatttagtgtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 tgtaacttgtgccatctgcatgggagatgcatgtgtggtcattgtctaaatttagtgtaa 213

                                                                       
Query: 61  aacttggtgggagaaatgactcatcctaaattgtaggtgtgggagatgtgccattaacta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 214 aacttggtgggagaaatgactcatcctaaattgtaggtgtgggagatgtggcattaacta 273

                                                                       
Query: 121 atggtgtgttaggcctgttgaaagatcatgtgctacttcccttttgactgggatgcagag 180
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 274 atggtgtgttaggcctgttgaaagatcatgtgctacttcccttctgactgggatgcggag 333

                                                                       
Query: 181 cgcagcctggatcctgcctgccctgctccttttcctattagtccacgg------------ 228
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 334 cgcagcctggatcctgcctgccctgctccttttcctattagtccacggctccctcccatc 393

                                                                       
Query: 229 -----------------------------------ttgccagttccctaccctgaggtcc 253
                                              |||||||||||||||||||||||||
Sbjct: 394 ccggagtcgctctcctagattgctcacctagatcgttgccagttccctaccctgaggtcc 453

                                                                       
Query: 254 cagaccacaggtgacgcctcagcctccttgtcatttcctgccacctgcctcaagtgccct 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cagaccacaggtgacgcctcagcctccttgtcatttcctgccacctgcctcaagtgccct 513

                                                                       
Query: 314 cacactggtcccagctagtcacgcacagccctcccctccctacctgcttcaccctcgtag 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cacactggtcccagctagtcacgcacagccctcccctccctacctgcttcaccctcgtag 573

                                                        
Query: 374 cccactgcagggaaatgaaaccgcctctgctcaggtctttcatga 418
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cccactgcagggaaatgaaaccgcctctgctcaggtctttcatga 618


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information