BAC Information

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BAC

Clone NameMSMg01-114D11
Chromosome4 (Build37)
Map Location 58,869,291 - 58,869,850
singlet/doubletsinglet
Overlap geneAI314180
Upstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711, Olfr267
Downstream geneLOC100041581, Ltb4dh, 2010203O07Rik, Gng10, AI481877, LOC433712, Ugcg, LOC100041535, LOC634731, LOC666719, Rod1, Hsdl2, E130308A19Rik, LOC100041592, 1110054O05Rik, Snx30
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114D11.T7 (MSMg01no114_d11.b1)MSMg01-114D11.TJ (MSMg01no114_d11.g1)
ACCAG326153AG326154
length706720
length of high quality
(start - end)
563 (42 - 604)640 (72 - 711)
definitionCHROMAT_FILE: MSMg01no114_d11.b1 PHD_FILE: MSMg01no114_d11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:51 2005CHROMAT_FILE: MSMg01no114_d11.g1 PHD_FILE: MSMg01no114_d11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:19:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGCTTTCTGCTGTGCAGCTAGAGGTTGCAGGGCTGATAAAGATTTTCAG
TTGTAGTTCCAGTAGCTCAATCTGAAGTTAATAATTTAATCATGGCATTA
GTCCTGGGCTTCTTGAGGTTGTGGGCCTGTTACTGGATTTTAAGGCCTGG
ACTTAATCCCTTTGACTTACCTGAAGCAAGCAAGCTTTCTAAACTCCATA
TTTTTCAGGTTCTAGTTGAAAAATGAAGCTAATAAGTACTTCTCTCTTGC
CTTTTTCATTGCACCTCCTCCGTTTCCTTGTTGTCTTCTTCATTTTTGTT
TTTGAGTTACAATCAAACCAGGCACTGTGGGCACCCTCTTTCCTTAGTTC
TTCCGAGGACAGTTTTGTGTCTGTAAGGTGATTTGAAAGATCTTAACTCA
ATGGCCATCTTCCTCTGCTTTCTTCAGAGATTACTTTTAGAATGTTGATG
TAGTTTCTTTTTATTTCTGGCCGAATGTCTTTATTACGTAAAGATGAAGA
ATTTTATACACCTGTATAAATTGAAACAACCGTGCATTTTCTTTTTCTAT
TCTGTTGACATGGATTATTATAGCGATGATTCTGTCTGTGAAACTTCCTT
ATCTTCCAAAGCTATTTACGTTGAAAAGACTTATTAATCCCTAGAAAGGT
ACATGA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGACCTTTCCAAGACTTTTACCATGAAG
GGGTATTGGATTTTGTCAAATGCTTTTTCAGCATCTAATGAAATGATCAT
GTGTTTTTCTTTTCTTTGAGTTTATTTATGTAGTGGATTTCATTAATAGA
TTTCCATATATTGAACCAACCCTGCATCCCTGGGATGAAGGCTACTTAAT
CTTGGTGAATGATCATTTTGATGTGTTCTTGGATTTGGTTGGCAAGAAAT
TTTTGAGTATTTTTGCATCAATGCTCACAAGGGACATGTGTCTGAAGTTC
TCTTTCATTGTTTGGTCTTTATGTGGTTTAGGTTATAAGCATAGTTGTGG
CTTCATAGAATGAATTGGGTAGTGTTCGTTCTGTTTCTATTTTGTGGAAT
ATTTTGAAGAGGATTGGTTTTTAGGTCTTCTTTAAAGGTCTGATAGAATT
CTCCACTAAACACATCTGGTCTTGGGCTTTCTTTGGTTGGGAGACTATTA
ATGACTGTTTCTATTTCCTTAGGGGTTATGGGACTATTTAGATGGTTTAG
ATCTGATCCTGTCTTAACTTTGGCACCTGGTATGTGTGTAGAAAATTGTC
CATTTCATCCAGATTTTCCAATAAGCTTTTATAGTAGGATCTGATGATTT
TTTGAATTTCCACAGTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_d11.b1 MSMg01no114_d11.b1 CHROMAT_FILE:
MSMg01no114_d11.b1 PHD_FILE: MSMg01no114_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:19:51 2005
         (563 letters)



>mm_chr4_58869088_58870050
          Length = 963

 Score = 1075 bits (556), Expect = 0.0
 Identities = 559/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgctttctgctgtgcagctagaggttgcagggctgataaagattttcagttgt 63
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 ggaattctgcttcctgctgtgcagctagaggttgcagggctgataaagattttcagttgt 704

                                                                       
Query: 64  agttccagtagctcaatctgaagttaataatttaatcatggcattagtcctgggcttctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 agttccagtagctcaatctgaagttaataatttaatcatggcattagtcctgggcttctt 644

                                                                       
Query: 124 gaggttgtgggcctgttactggattttaaggcctggacttaatccctttgacttacctga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 gaggttgtgggcctgttactggattttaaggcctggacttaatccctttgacttacctga 584

                                                                       
Query: 184 agcaagcaagctttctaaactccatatttttcaggttctagttgaaaaatgaagctaata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 agcaagcaagctttctaaactccatatttttcaggttctagttgaaaaatgaagctaata 524

                                                                       
Query: 244 agtacttctctcttgcctttttcattgcacctcctccgtttccttgttgtcttcttcatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 agtacttctctcttgcctttttcattgcacctcctccgtttccttgttgtcttcttcatt 464

                                                                       
Query: 304 tttgtttttgagttacaatcaaaccaggcactgtgggcaccctctttccttagttcttcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tttgtttttgagttacaatcaaaccaggcactgtgggcaccctctttccttagttcttcc 404

                                                                       
Query: 364 gaggacagttttgtgtctgtaaggtgatttgaaagatcttaactcaatggccatcttcct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gaggacagttttgtgtctgtaaggtgatttgaaagatcttaactcaatggccatcttcct 344

                                                                       
Query: 424 ctgctttcttcagagattacttttagaatgttgatgtagtttctttttatttctggccga 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctgctttcttcagagattacttttagaatgttgatgtagtttctttttatttctggccga 284

                                                                       
Query: 484 atgtctttattacgtaaagatgaagaattttatacacctgtataaattgaaacaaccgtg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 atgtctttattacgtaaagatgaagaattttatacacctgtataaattgaaacaaccgtg 224

                               
Query: 544 cattttctttttctattctg 563
           ||||||||||||||||||||
Sbjct: 223 cattttctttttctattctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)