BAC Information

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BAC

Clone NameMSMg01-114F11
Chromosome4 (Build37)
Map Location 107,070,611 - 107,210,623
singlet/doubletdoublet
Overlap geneTmem48, Glis1
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920
Downstream geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114F11.T7 (MSMg01no114_f11.b1)MSMg01-114F11.TJ (MSMg01no114_f11.g1)
ACCAG326245AG326246
length697724
length of high quality
(start - end)		238 (81 - 318)281 (75 - 355)
definitionCHROMAT_FILE: MSMg01no114_f11.b1 PHD_FILE: MSMg01no114_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:00 2005CHROMAT_FILE: MSMg01no114_f11.g1 PHD_FILE: MSMg01no114_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,210,386 - 107,210,623)(107,070,611 - 107,070,886)
sequence
TTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXNATCGGCACCGGGC
GCGGAANTCAAGGACTAACGGGATGACGGCGGGGAAGACGGAGGAAATTT
AAAATTCCTTTCGACAGATTAACTACCGACACTTTGAAGCCATAAATCAT
GCAGTCTAGAAGAAGCTAATAATGGATTTGGGTTTTGTTCCTATTTATTA
TCTCGAAGAGATAGCAGAATTTAAGGCCAATGGGGCCTGGCTGGCGACCC
TCTATTATTCCTCTGCCAGCATCCCCTGGATAAGAGATGGACCAAGGAAG
GAGCAGGAACATAGAATGATTTCTGATTTTATGGCTGTGAGCTTGATACA
ATTTGTATAGTTTTTTTTCCCCCCCCCCCCGGCAGAACTGTGCCCACTTT
ATGGATGAGGACTTTAAGGCGAACTGTTACCAAATACATCGCCGGGGGGA
GTGACTCCAAAGTCCTCTAATAGAGTGCAGTGAAAGGAATGCCTTAGAGG
ACTTGGGAGAGCTAGGGACTCAGTAGTAGCAAGCTCCCCAGCTTGTGTTA
GGACCCTAAGAGACTGGCGTTCTTCCACATGCATGCCTTTAGCCTCATAG
GTAATGTTTCCAGGACACCTCCAATGGCCATTTCCTTACGGTTATGCTCC
TGCCTTTTTTTTATTCTGGAACGCCTTGGCCAAGAGAAAGATAACAT

CTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGGTCCCTTTGTGAGGCTCCTGTTGA
AGTCACAGATATCCTCAGGCCTGACCCCCAGCACTACTGCCTGCTGTGCC
ATCCTACCAGTCCAGTAGTGTTCTTAAAGCCCTTAGGGCTAGGAAGGAAA
TCAATTATATTGAGTTGCAGTTATCAAGATACGAGTTTATGCTATCTTGA
TCTGTGCTTTCTGATTGTTTTAAGTGGGAGGCTCTGTCCATGAGTTCATG
CTTTGTCATCATTTTGAAGCATTTGGGTGAATGGTAGTTTTAGATAACTG
CACCAGCTATAATAGGATGTGAAGGTAGTGGTGACATCTTTAATGCAGTA
ACTGCTTTGATGCCCCTGTTTATAATTAAAGTCAACACTAAATTATAATT
TACTGCTTTGGGAAGGAAGGTAAATGTAGAACAGCCCTTTCTCCCAAGCC
CAGCCCTCTGTGCTCTTGCATCACAGAGCATTTTCCTGGCTCCTTGCCTT
CCAGCTCCTGCCTTGGCTGAGGGTCTTCCCTCTCTAGGTCAGGCCTTACA
GTCTCTTACTTCAGCCACTTTAGCAGCAGATGCTATCCACATCCTTGCGT
CTTTAAGTTCCCCATCCCCAAACTGTCAAAACATCCTGCATCTGCTACCC
ACCCATTCCTTCTCCCGTTGCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_f11.b1 MSMg01no114_f11.b1 CHROMAT_FILE:
MSMg01no114_f11.b1 PHD_FILE: MSMg01no114_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:00 2005
         (238 letters)



>mm_chr4_107210186_107210823
          Length = 638

 Score =  391 bits (202), Expect = e-113
 Identities = 229/238 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggggaagacggaggaaatttaaaattcctttcgacagattaactaccgacactttgaagc 60
           |||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 438 ggggaagacggatgaaatttaaaattcctttcgacagattaactagagacactttgaagc 379

                                                                       
Query: 61  cataaatcatgcagtctagaagaagctaataatggatttgggttttgttcctatttatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cataaatcatgcagtctagaagaagctaataatggatttgggttttgttcctatttatta 319

                                                                       
Query: 121 tctcgaagagatagcagaatttaaggccaatggggcctggctggcgaccctctattattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |
Sbjct: 318 tctcgaagagatagcagaatttaaggccaatggggcctggctggcgaccctctaggaacc 259

                                                                     
Query: 181 ctctgccagcatcccctggataagagatggaccaaggaaggagcaggaacatagaatg 238
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 258 ctctgccagcatcccctggataagagatggaccagggaaggagcagggacatagaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no114_f11.g1 MSMg01no114_f11.g1 CHROMAT_FILE:
MSMg01no114_f11.g1 PHD_FILE: MSMg01no114_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:00 2005
         (281 letters)



>mm_chr4_107070411_107071091
          Length = 681

 Score =  505 bits (261), Expect = e-147
 Identities = 273/277 (98%), Gaps = 2/277 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtccctttgtgaggctcctgttgaagtcacagatatcctcaggcctgacccccagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtccctttgtgaggctcctgttgaagtcacagatatcctcaggcctgacccccagcac 260

                                                                       
Query: 61  tactgcctgctgtgccatcctaccagtccagtagtgttcttaaagcccttagggctagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactgcctgctgtgccatcctaccagtccagtagtgttcttaaagcccttagggctagga 320

                                                                       
Query: 121 aggaaatcaattatattgagttgcagttatcaagatacgagtttatgctatcttgatctg 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaatcaattatattgagttgtagttatcaagatacgagtttatgctatcttgatctg 380

                                                                       
Query: 181 tgctttctgattgttttaagtgggaggctctgtccatgagttcatgctttgtcatcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgctttctgattgttttaagtgggaggctctgtccatgagttcatgctttgtcatcattt 440

                                                
Query: 241 tgaagcatttgggtgaatggtag-ttttagataactg 276
           ||||||| ||||||||||||| | |||||||||||||
Sbjct: 441 tgaagcagttgggtgaatggt-gcttttagataactg 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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