BAC Information

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BAC

Clone NameMSMg01-114G15
Chromosome4 (Build37)
Map Location 100,317,414 - 100,317,909
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573
Downstream geneCachd1, LOC100039747, Raver2, Jak1, E130102H24Rik, Ak3l1, LOC669460, Dnajc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-114G15.T7 (MSMg01no114_g15.b1)MSMg01-114G15.TJ (MSMg01no114_g15.g1)
ACCAG326301AG326302
length707723
length of high quality
(start - end)
235 (61 - 295)501 (73 - 573)
definitionCHROMAT_FILE: MSMg01no114_g15.b1 PHD_FILE: MSMg01no114_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:06 2005CHROMAT_FILE: MSMg01no114_g15.g1 PHD_FILE: MSMg01no114_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGACCTAGATGCATACCCAGCCGNGGAANNCNCATGTGTCCCCAACACCA
CCATATCNANATTTTTAAATGTTACAACTGAGTCCATTTAAAAAGATCAC
ATGCTAATAAAATGGAAGATATGGTTAGCCTTCTCTGCAGGTTCCACATC
TTTGAGCTCCAACCACATGAGGATAGAAAATACAGGAGAAACTTTCATCT
GTATTGAACATGTGCAGATTTTTTTCTCATACCTATTCCCTAAACAGCAT
AGTAAGACAACGTTGTAGTGTGCATGATTAGTAATCTAGAGATGATCAAT
AGNTTACAGGAGGGCTGGGGAGGGGGATCATCTATTTTTTTTTTACTACC
CCCCCCCCTGAGCAGGCTTGGGCTGTATGTCCTGGAGCCCATCCCCTACA
CATAAAACAAGAAAGTTCTATCTCAGCTCACTGAACAAGGCATACCGTTT
GGCTGAGTTTAAGAACATAGCTGGCGAGCTAAGAGGAAGAGGGAACAGTC
TTCCCAGCAGACTTCCTAAATGCCTACTCAGTGCTGCCTATCTTGGCAAA
TAGCCACTGCTATACCTTCTCGTCAATAACTTATGACCAAAACTCTAAAA
CACAATTAAACAAGAAATTCACCATGGCCCCAATTAGTTTTATTTCTCAT
AGAGGACATATTTGCAGGTAGGAGAGAATACGTATAGAACAGCTCTTACA
GGCCACC
ATGCAGTGGGAGGCCTGGNGGCCGCCTGGTTCTCAAATTTAGGTGAACTA
TACAAGTTTCCGCAAACACCCTCTGCCCTTGATCAGAGAGTAAGGTTGCC
CAACGTGACTCAGTCCTTTTTCCTCAGTACATGCAGGCAAGTCAAGGAAA
GACCATGTGGCTCTCAGGATGTCAGCAATCACTTTAGGTAGATATCAATC
TTCTTGGAAACAGCAGGTCTCCCTGGAAACTCCCTTAAGAGTTTAGATGG
GCCTGGAGTGTAACCCTGTGGGTCTGGGTAGCCATGGAGCAGTGGGAAGC
CAGCCTGAGCAAGAGTGTGTTTGAGGCAAGTCCAAACCCTGATACTGGCA
AGTGTAGGTTCGATACACTCTCTACCCTGTACCTGCACGTTCTGGCAATA
TGCTCATATAGCCACACACTGCCACCCACTCAGAACCCCCCAGGTTCCCC
ACTCCACACCTGTCTTGTCTCTTGGTCCAGGAGAATTCCATGGATGACTT
TCTGCCATCTCCGTTGGCTTTCTGTTGGTTTGGATCTCCAGTCCCTCATC
CCACTTCCAAAGGAGTAAAGTTGAGCACCCTGGAGGGCAGACAGAAGTTG
GCTTGCTAGGACCTAAAACTTGAGATTATAGCACTCATTAGGCGCAGCCT
TGCAGTCAGGGTTTGAATTAAGAATGGTAAAGGCCCACCGAGCATGCCAC
ACACGATAACTCATTATGGCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no114_g15.g1 MSMg01no114_g15.g1 CHROMAT_FILE:
MSMg01no114_g15.g1 PHD_FILE: MSMg01no114_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:06 2005
         (501 letters)



>mm_chr4_100317214_100318114
          Length = 901

 Score =  859 bits (444), Expect = 0.0
 Identities = 483/496 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcccttgatcagagagtaaggttgcccaacgtgactcagtcctttttcctcagtacat 60
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 201 ctgcccttgatcagagagtaaggttgcccaacgtgactcagccctctttcctcagtacat 260

                                                                       
Query: 61  gcaggcaagtcaaggaaagaccatgtggctctcaggatgtcagcaatcactttaggtaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 261 gcaggcaagtcaaggaaagaccatgtggctctcaggatgtcagcaatcactttaggtagg 320

                                                                       
Query: 121 tatcaatcttcttggaaacagcaggtctccctggaaactcccttaagagtttagatgggc 180
           ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tatcaatcttcttggaaacagcaagtctccctggaaacttccttaagagtttagatgggc 380

                                                                       
Query: 181 ctggagtgtaaccctgtgggtctgggtagccatggagcagtgggaagccagcctgagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggagtgtaaccctgtgggtctgggtagccatggagcagtgggaagccagcctgagcaa 440

                                                                       
Query: 241 gagtgtgtttgaggcaagtccaaaccctgatactggcaagtgtaggttcgatacactctc 300
           ||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gagtgggattgaggcaagtccaaaccctgatactggcaagtgtagggtcgatacactctc 500

                                                                       
Query: 301 taccctgtacctgcacgttctggcaatatgctcatatagccacacactgccacccactca 360
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 501 taccctgtacctgcacgttctggcaatatgctcatatagctgcacactgccacccactca 560

                                                                       
Query: 361 gaaccccccaggttccccactccacacctgtcttgtctcttggtccaggagaattccatg 420
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 gaaccccccaggctccccactccacacctgtcttgtctcttggtccaggagaattctatg 620

                                                                       
Query: 421 gatgactttctgccatctccgttggctttctgttggtttggatctccagtccctcatccc 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatgactttctgccatctctgttggctttctgttggtttggatctccagtccctcatccc 680

                           
Query: 481 acttccaaaggagtaa 496
           ||||||||||||||||
Sbjct: 681 acttccaaaggagtaa 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)