BAC Information

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BAC

Clone NameMSMg01-115B06
Chromosome4 (Build37)
Map Location 142,632,798 - 142,633,257
singlet/doubletsinglet
Overlap gene6330411D24Rik
Upstream geneTmem51, 9030409G11Rik, EG665983, LOC546484
Downstream genePrdm2, LOC666018, EG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115B06.T7 (MSMg01no115_b06.b1)MSMg01-115B06.TJ (MSMg01no115_b06.g1)
ACCAG326803AG326804
length722739
length of high quality
(start - end)
483 (39 - 521)321 (85 - 405)
definitionCHROMAT_FILE: MSMg01no115_b06.b1 PHD_FILE: MSMg01no115_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:56 2005CHROMAT_FILE: MSMg01no115_b06.g1 PHD_FILE: MSMg01no115_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:20:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
CCAGTGTGAATGGAGATGAATGGCTCTCATTATTTAATCAGCAGAGAACC
AAAGGCTCTGCACACAGATGCTCTGACCACAGGGGGTTGCCGAGACATGC
TGCAGGAGCCGCTTCTTGCTTCCTTCAAGCCCAGACAAGTAAGATGAGAT
CTGCAGGGTGGGAAAAGGCACTGGTGGCAAATAGCCTAGGAGTGACCTTG
GCTGGCCAAGAGGGACAGCTCAGCTCAGGATGCCCTAAGCATCAAGTTTT
CTGTTTCTCACTCATGACTGATGAGCATCGTGGGATAGCCAGGGATGCAG
AGGTGATTGTACCCAACGCTTCCTTTTCTTCCTTTTCTCTAGATATCGAG
TCCAGAAAACCCCCATGCAGCTTGCAAAGCACAGGCTAAACATTGCCAAT
CTATTATAGTTCTGATATGGCGGGTTCTTCCAAAGGCTTATGCACTGAAA
GCTTGGTCCCCAGCCGATGGCACCCACTGAGAAAGTTCTAGAACTAAGAT
ATGGGAATTAGCTAAGAATGAATCAGTTGTGTGGGGAGCATGTCCTTAAA
ATCTGTATCTTGCCCTAGGTCTGTCTTTCAGTCCGTCTGTTAGACCCCCT
CTCCCCCTCTCTCTCTCTCTCTCCCTCTCCTCTCTCTCTTCCTCGCATTG
TGAGGGGCCATCCTCCTTCCTT
NCCCCNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCT
ACACAGAAACCCTGTCTCGAAAAACAAAACAAAACAAAACAAACAAAAAA
AAACAACAACAACAAAAAAAGTGAAAGTATAAGCCAGTGGTGTGGTGTGG
TGGTACACACGTTTAGCCCCAGCACTTGGGACGTCCAGGACTAACTCTGT
CTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAGGAAGAAAG
AAAGAGAAGCAAAGAAAAGAAGAGGAAAGAAAAGGTTAAGATCCTTATTT
TTTCCAACAAGAAATGATGAATGGGTTTTTGTTTGGACATGGAGGGGGAG
GTATAGGAAGTTTTCCTGTTTCTGATTTTTCCCCCCCCCCTTTTAGATAA
TTATTAATATGAGTTCTGTTCCCCTCCATCTCTTTCATGTATGCATTTAT
TTATATTTTTGTGAAAATGTAACATGACTTAAGTTGTCCCTCTGACTTTT
ACACGTCTTACTTTTTGCATACATTTTTTTCTCTTCCTCTAGTTTTTTAC
CTACTTACTTCTCTCCTCCTTCCTCCATTATCTCTCCACCTCTCTGCCTA
TTTCCTATTCTATTCCTTGCCACTACTAGTTTCTAATTCCTTAATTCTTT
CTTTCACCATATTTCTATTTCCACCCCCTTTTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_b06.b1 MSMg01no115_b06.b1 CHROMAT_FILE:
MSMg01no115_b06.b1 PHD_FILE: MSMg01no115_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:20:56 2005
         (483 letters)



>mm_chr4_142632594_142633476
          Length = 883

 Score =  851 bits (440), Expect = 0.0
 Identities = 455/460 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccagtgtgaatggagatgaatggctctcattatttaatcagcagagaaccaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccagtgtgaatggagatgaatggctctcattatttaatcagcagagaaccaa 264

                                                                       
Query: 65  aggctctgcacacagatgctctgaccacagggggttgccgagacatgctgcaggagccgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggctctgcacacagatgctctgaccacagggggttgccgagacatgctgcaggagccgc 324

                                                                       
Query: 125 ttcttgcttccttcaagcccagacaagtaagatgagatctgcagggtgggaaaaggcact 184
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 325 ttcttgcttccttcaagcccagacgagtaagatgagagctgcagggtgggaaaaggcact 384

                                                                       
Query: 185 ggtggcaaatagcctaggagtgaccttggctggccaagagggacagctcagctcaggatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtggcaaatagcctaggagtgaccttggctggccaagagggacagctcagctcaggatg 444

                                                                       
Query: 245 ccctaagcatcaagttttctgtttctcactcatgactgatgagcatcgtgggatagccag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccctaagcatcaagttttctgtttctcactcatgactgatgagcatcgtgggatagccag 504

                                                                       
Query: 305 ggatgcagaggtgattgtacccaacgcttccttttcttccttttctctagatatcgagtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggatgcagaggtgattgtacccaacgcttccttttcttccttttctctagatatcgagtc 564

                                                                       
Query: 365 cagaaaacccccatgcagcttgcaaagcacaggctaaacattgccaatctattatagttc 424
           |||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagaaaattcctatgcagcttgcaaagcacaggctaaacattgccaatctattatagttc 624

                                                   
Query: 425 tgatatggcgggttcttccaaaggcttatgcactgaaagc 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgatatggcgggttcttccaaaggcttatgcactgaaagc 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)