Query= MSMg01no115_m11.b1 MSMg01no115_m11.b1 CHROMAT_FILE:
MSMg01no115_m11.b1 PHD_FILE: MSMg01no115_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:49 2005
(567 letters)
>mm_chr4_74070771_74071737
Length = 967
Score = 1029 bits (532), Expect = 0.0
Identities = 553/560 (98%)
Strand = Plus / Minus
Query: 8 ttctccgcataccttacaggcaactcagatgtcaaagagtctccttaggacactgggctg 67
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 767 ttctccgcataccttacaggcaactcagatgtcaaagagtatccttaggacactgggctg 708
Query: 68 gtgagaaagtctcctaccaaggaattaattgctacttcgctaaccatggaagagagacct 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gtgagaaagtctcctaccaaggaattaattgctacttcgctaaccatggaagagagacct 648
Query: 128 atctaccaatcttgtaatttcaggaacttcctttgtctcatgagcctttgagaggaaatg 187
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 647 atctaccaatcttgtaatttcaggaatttcctttgtctcatgagcctttgagaggaaatg 588
Query: 188 tttcactttggaagatgtcatcatctcagttccctaagcaattacccctgtctcttcatc 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tttcactttggaagatgtcatcatctcagttccctaagcaattacccctgtctcttcatc 528
Query: 248 ctctacttgaatgctcaagttaattcttgggaaagcttattactataccaaggtcacaaa 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctctacttgaatgctcaagttaattcttgggaaagcttattactataccaaggtcacaaa 468
Query: 308 atactagaagattaatgatggttacaatcataaagatgataaaagacaatactaataacc 367
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 atactggaagattaatgatggttacaatcataaagatgataaaagacaatactaataacc 408
Query: 368 atagtagctgatacttttgaaatttgccattatactgaacacttgtataacctctctcat 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 atagtagctgatacttttgaaatttgccattatactgaacacttgtataacctctctcat 348
Query: 428 ttgatgtttaccaagaatgttaaggaataatcactgggctcagtatgcacaccagtatta 487
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 347 ttgatgtttaccaagaatgttaaggaataatcactgggctcagtatgtagaccagtatta 288
Query: 488 ggtcatacatagaataacagaggttgtatgtttgatgattagcattgaaaaatgaatttc 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggtcatacatagaataacagaggttgtatgtttgatgattagcattgaaaaatgaatttc 228
Query: 548 cagcacattactaagtttca 567
||| | ||||||||||||||
Sbjct: 227 cagtaaattactaagtttca 208
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no115_m11.g1 MSMg01no115_m11.g1 CHROMAT_FILE:
MSMg01no115_m11.g1 PHD_FILE: MSMg01no115_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:49 2005
(508 letters)
>mm_chr4_73937775_73938682
Length = 908
Score = 917 bits (474), Expect = 0.0
Identities = 494/508 (97%), Gaps = 12/508 (2%)
Strand = Plus / Plus
Query: 1 cattcttatatcctgtattgacctcctttttttattcagttgtcttttttcccttgtagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cattcttatatcctgtattgacctcctttttttattcagttgtcttttttcccttgtagt 272
Query: 61 ttattcaagtgtttattcatatcacctttcatttctttttttctttttttaaagacttat 120
||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttattca------------tatcacctttcatttctttttttctttttttaaagacttat 320
Query: 121 ttgtttgcttatttaatctatgcgagtacactgtagctgacttgagacacaccagaagaa 180
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtttgcttatttaatgtatgcgagtacactgtagctgacttgagacacaccagaagaa 380
Query: 181 ggcattggatcccattacagatggttgtgagtcaccatgtggttgctgagaattgaactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcattggatcccattacagatggttgtgagtcaccatgtggttgctgagaattgaactc 440
Query: 241 aggacctctggaagagcagtttgtgctcttagacactgagctgtctctccagccccccat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacctctggaagagcagtttgtgctcttagacactgagctgtctctccagccccccat 500
Query: 301 ccttcatttcttaaacatacttttcattcttttgagttatttgtccaggatcttttctga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ccttcatttcttaaacatacttttcattcttttgagttatttgtccaggatctttactga 560
Query: 361 tcttctcttatcaggcaggggacattattttggaattagtagactttagagaagtcataa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttctcttatcaggcaggggacattattttggaattagtagactttagagaagtcataa 620
Query: 421 ggtattttgtgttctgttttgtattgggatttgtaccttagaagttagtttttttgaccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtattttgtgttctgttttgtattgggatttgtaccttagaagttagtttttttgaccc 680
Query: 481 tcccacccccatattacagcatctgtaa 508
||||||||||||||||||||||||||||
Sbjct: 681 tcccacccccatattacagcatctgtaa 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space: 447204
Effective search space used: 447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
