BAC Information

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BAC

Clone NameMSMg01-115M13
Chromosome4 (Build37)
Map Location 74,414,241 - 74,563,276
singlet/doubletdoublet
Overlap genenone
Upstream geneRasef, LOC667768, LOC545637, LOC623272, OTTMUSG00000014862, OTTMUSG00000004010, 2310002L09Rik, Frmd3, LOC100039774, Jmjd2c, LOC100040258, LOC100039814
Downstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115M13.T7 (MSMg01no115_m13.b1)MSMg01-115M13.TJ (MSMg01no115_m13.g1)
ACCAG327327AG327328
length739709
length of high quality
(start - end)
587 (34 - 620)483 (83 - 565)
definitionCHROMAT_FILE: MSMg01no115_m13.b1 PHD_FILE: MSMg01no115_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:49 2005CHROMAT_FILE: MSMg01no115_m13.g1 PHD_FILE: MSMg01no115_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:21:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,562,783 - 74,563,276)(74,414,241 - 74,414,722)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCATTTCCTATTCAAATCACTACATTCAGAAAATGGGGTTTAAAGAG
GCTCATTGACTTCAGAGCAGTGTTTCTTAATGTCTGCTATACTTGCTAGA
CCTGTAGTCCTCACAGAATGAAACTTGCATCAGGTCTACCTGAAACTCAT
AAGAAATGAAACTTCTCTGACTCAGTCTTCTTTGATTCACCTCAGAATCA
GAAGCTGAAACCAATGCTTTATCTTTTAACAAGCCCTCTAGGGCAATCTG
ATAGAGACTCAACTTTGAGAACTACTTTTCAAAAGTAGAATTCTGTAAAT
TACAGCAATAACCTGTTTTAATAGACAAGTTTTATAGGAATATAGACCTC
TTCTGTCCTTTGTATATGGTCTAAGGCTACTTTAGTTCTGCAGTGCTGGA
GTTGACTAGATAGGCCAGAGATGAAGGAAATTTTACGAGCAGAAGTGTGA
ATAAAATCTAAGTCAGCACAATTTTAACATTCTTACTCTACACTTCAACA
CTGAGAAATGGAAACACATGAAGATGCGATAGATAAGTCTCTATGCCCAA
ACAAATGTTTCCTTAGTCTTGCCCTAATTACAGCTCAAGAAACATCAGTG
ACTTAATCAGTTGAAATTGCCCTACATTAAAATGCTATAGACTGCGCCAA
TTAATGAGCAGAAATTCATTCTTACCGTTTGGAGACTAT
TTTTTNNCCCCGATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTCACCTGTCTGGAC
AGAGTCAATCGTTGTCACCAAACACAAGACAAGAGCAATGTAAGGAATTC
TGTATGATTATGTATTTCACCTCCGGGGAAATTAAGATTGGAATCAGAGG
AGTTGACTGAAGGTCATAACATTCTTAGCAGTATGTAAACCTGTTTGACT
TCGGGATTCTTTCATTAACATAGGACCATGAAAAATTTCTAACAGATGTC
ACACTTTTCCATCAAAGGTCTGTGGTGTAAAAGAAAGCATCTAATCAACT
ATGCTGTCAGATTGCTATAGTCACTTTTTGGGAGATAGAAGGAATATTTA
TCGTTCTTAAACTTTCCCACCAGGAACTGATATTGTGTTCTCCCAAATTC
TTTGATCCCTCCAAATAGGGAGGTTGTGTAAGCTGAACAGCAGTAAATGA
TGGGTATTTCTTGTTACATGTTTTAATTTGCACATGAAAATATGACTAAA
GCAAACAGTGATGGTCTTGTTCATGGCAAACAGCATACAAAGAAAGCATG
ATGTCTTTCTAATATAATTAGTCCAATTAATTAAAGTACGTTTATTTTTC
CAGGCCCACAGTCCTTCTTTAAACCTGTTATTTTTCCCCAGAACATCTGT
GTATTGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_m13.b1 MSMg01no115_m13.b1 CHROMAT_FILE:
MSMg01no115_m13.b1 PHD_FILE: MSMg01no115_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:49 2005
         (587 letters)



>mm_chr4_74562290_74563276
          Length = 987

 Score =  940 bits (486), Expect = 0.0
 Identities = 492/494 (99%)
 Strand = Plus / Minus

                                                                       
Query: 94  ttaatgtctgctatacttgctagacctgtagtcctcacagaatgaaacttgcatcaggtc 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 ttaatgtctgctatacttgctagacctgtagtcctcacagaatgaaacttgcatcaggtc 928

                                                                       
Query: 154 tacctgaaactcataagaaatgaaacttctctgactcagtcttctttgattcacctcaga 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 tacctgaaactcataagaaatgaaacttctctgactcagtcttctttgattcacctcaga 868

                                                                       
Query: 214 atcagaagctgaaaccaatgctttatcttttaacaagccctctagggcaatctgatagag 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 atcagaagctgaaaccaatgctttatcttttaacaagccctctagggcaatctgatagag 808

                                                                       
Query: 274 actcaactttgagaactacttttcaaaagtagaattctgtaaattacagcaataacctgt 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 actcaactttgagaactacttttcaaaagtagaattctgtaaattacagcaataacctgt 748

                                                                       
Query: 334 tttaatagacaagttttataggaatatagacctcttctgtcctttgtatatggtctaagg 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tttaatagacaagttttataggaatatagacctcttctgtcctttgtatatggtctaagg 688

                                                                       
Query: 394 ctactttagttctgcagtgctggagttgactagataggccagagatgaaggaaattttac 453
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 687 ctactttagttctgcagtgctggagttgactagatgggccagagatgaaggaaattttag 628

                                                                       
Query: 454 gagcagaagtgtgaataaaatctaagtcagcacaattttaacattcttactctacacttc 513
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gagcagaagtgtgaataaaatctaagtcagcacaattttaacattcttactctacacttc 568

                                                                       
Query: 514 aacactgagaaatggaaacacatgaagatgcgatagataagtctctatgcccaaacaaat 573
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aacactgagaaatggaaacacatgaagatgcgatagataagtctctatgcccaaacaaat 508

                         
Query: 574 gtttccttagtctt 587
           ||||||||||||||
Sbjct: 507 gtttccttagtctt 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no115_m13.g1 MSMg01no115_m13.g1 CHROMAT_FILE:
MSMg01no115_m13.g1 PHD_FILE: MSMg01no115_m13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:49 2005
         (483 letters)



>mm_chr4_74414041_74414923
          Length = 883

 Score =  855 bits (442), Expect = 0.0
 Identities = 472/482 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtcacctgtctggacagagtcaatcgttgtcaccaaacacaagacaagagcaatgta 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 caagtcacctgtctggacagagtcaatcgttgtcaccaatcacaagacaagagcaatgta 260

                                                                       
Query: 61  aggaattctgtatgattatgtatttcacctccggggaaattaagattggaatcagaggag 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 aggaattctgtatgattatgtatttcacctccggggaaattaagattgcaatcagaggag 320

                                                                       
Query: 121 ttgactgaaggtcataacattcttagcagtatgtaaacctgtttgacttcgggattcttt 180
           |||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 ttggttgaaggtcataacattcttagcagtatgtaaacctgtttgacttctggattcttt 380

                                                                       
Query: 181 cattaacataggaccatgaaaaatttctaacagatgtcacacttttccatcaaaggtctg 240
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 cattaacataggtccatgaaaaatttctaacagatgtcacatttttccatcaaaggtctg 440

                                                                       
Query: 241 tggtgtaaaagaaagcatctaatcaactatgctgtcagattgctatagtcactttttggg 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 tggtgtaaaagaaagcatctaatcaactacgctgtcagattgctatagtcactttttggg 500

                                                                       
Query: 301 agatagaaggaatatttatcgttcttaaactttcccaccaggaactgatattgtgttctc 360
           |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 501 agatagaaggaatatttatcgttcttaaacttccccacaaggaactgatattgtgttctc 560

                                                                       
Query: 361 ccaaattctttgatccctccaaatagggaggttgtgtaagctgaacagcagtaaatgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaaattctttgatccctccaaatagggaggttgtgtaagctgaacagcagtaaatgatg 620

                                                                       
Query: 421 ggtatttcttgttacatgttttaatttgcacatgaaaatatgactaaagcaaacagtgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtatttcttgttacatgttttaatttgcacatgaaaatatgactaaagcaaacagtgat 680

             
Query: 481 gg 482
           ||
Sbjct: 681 gg 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)