BAC Information

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BAC

Clone NameMSMg01-116A07
Chromosome4 (Build37)
Map Location 75,599,491 - 75,599,985
singlet/doubletsinglet
Overlap genePtprd
Upstream geneLOC636847, 3110001D03Rik, LOC623529, LOC100039833, LOC100039884, LOC667845
Downstream geneLOC667858, LOC667862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116A07.T7 (MSMg01no116_a07.b1)MSMg01-116A07.TJ (MSMg01no116_a07.g1)
ACCAG327504AG327505
length692691
length of high quality
(start - end)
488 (61 - 548)494 (98 - 591)
definitionCHROMAT_FILE: MSMg01no116_a07.b1 PHD_FILE: MSMg01no116_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:08 2005CHROMAT_FILE: MSMg01no116_a07.g1 PHD_FILE: MSMg01no116_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGTTGTGTGTGGTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXCGCGGAATTCAGTAAGATTCATGCCTATTCAGTGACATTC
AGAATTGCCTCTAGTATTGTAAGAGAGATAGTGAAAGAAATCAGGCATTA
CTACATAGAGTTAGAAATCTCAGGGCAAGCTTAGCAAAGTAAGTTTAGAA
TTCTTATTATAGTTATGTATGGCAGACTACATTAGTTATTAGTAGAAAGT
CCCCCCACACTATCATTTAGAATAAAAGCCAAGTTGCTCCCATATACAGA
AATTTACAATGGTTTAGGAAGTAGATCTGTGGTTTTAGAGTCTTGCATTA
TTCATGAGAAGGTTAGCTAGAGTGGAACTCCCTAATTAGAACCATGACTT
GGGCAAGAAAGACCTTGCCCCAGGAGTGTAAAGACCTCACACCTGGCTTC
TAAGACTCCAGCTGATCTTAGATAGAGCTGACTTGGTCTCAGTTGTTTTA
TTGCCCAGTTGCTGCCAGTCTTTATGTTTGCATTCCTCTGTTTTGTGTAA
GAGTCATTAAGCATCCGGTAACCTCATTTGTACCTTGCCGATGTGTCACC
TAACTTCCCTATTTTCTTCTGTATAAAAGGTTGATGCTCATTTTGACAAA
ATACATTCAGATTCCAGCACACTTCCTTATGTCCTGTCGGTT
NGGGAAGCGGNNTNTCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAT
GCCAGGGTAAGTTCAGCTCATAGTTAGCTAGAAATTAGGGTTACATATAC
TCCTCTGGGAGAAACATTTTCTAATAACCATTCTCAAAAGGAAGAGAAAT
CGCACATTGTAGATGACTTTAAAGAAAGGAATCTGTAACACTCCCTCTAT
CTGGGAAGTGTTTACATAAGCCCAGGCTTGGCTTCCCTTCAAGTGTAACA
CCTGGAAGCCCAGCTTTGGGGAAGGCAGTGCGGGCTTGTGTTGGGAAGTG
TGTACTGATTGGTTGGCTGCACTTAAGTTCACCTTCTCAGCTCATTCTCA
CTGGAGAGCTTTTGATTTCTTCATTACTTAAGGCTGTAAATGTGGTGTTG
GTTTTACAGCCCTTGAGGTCATATGGGCTTGTAGGTTAATTTGGTATGAC
TTTAAAACTGCAGAGCAAGTGGCATTCCTTGGAAGGCTCTGACAAGCCTT
GCACATTCTAATTTGATTCCTGGCATCGTCTGTTCCTCCATGTGCTAATG
TGCCTGTCCACGAGAGCTGTGAATTCACAACCCTTGCTGGCTAATTTCCA
TTTGCATTTCTCACAAAGATTGCTGAGTCCAAGGCTCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_a07.g1 MSMg01no116_a07.g1 CHROMAT_FILE:
MSMg01no116_a07.g1 PHD_FILE: MSMg01no116_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:08 2005
         (494 letters)



>mm_chr4_75599291_75600185
          Length = 895

 Score =  897 bits (464), Expect = 0.0
 Identities = 488/496 (98%), Gaps = 3/496 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgccagggtaagttcagctcatagttagctagaaattagggttacatatactcctctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gatgccagggtaagttcagctcatagttagctagaaattagggttacatatactcctctg 636

                                                                       
Query: 61  ggagaaacattttctaataaccattctcaaaaggaagagaaatcgcacattgtagatgac 120
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 635 ggagaaacattttctaataaccattctcaaaaggaaaagaaatcgcgcattgtagatgac 576

                                                                       
Query: 121 tttaaa-gaaaggaatctgtaaca-ctccctctatctgggaagtgtttacataagcccag 178
           |||||| ||||||||||||||||| | |||| |||||||||||| |||||||||||||||
Sbjct: 575 tttaaaggaaaggaatctgtaacatc-ccctttatctgggaagtatttacataagcccag 517

                                                                       
Query: 179 gcttggcttcccttcaagtgtaacacctggaagcccagctttggggaaggcagtgcgggc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gcttggcttcccttcaagtgtaacacctggaagcccagctttggggaaggcagtgcgggc 457

                                                                       
Query: 239 ttgtgttgggaagtgtgtactgattggttggctgcacttaagttcaccttctcagctcat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ttgtgttgggaagtgtgtactgattggttggctgcacttaagttcaccttctcagctcat 397

                                                                       
Query: 299 tctcactggagagcttttgatttcttcattacttaaggctgtaaatgtggtgttggtttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tctcactggagagcttttgatttcttcattacttaaggctgtaaatgtggtgttggtttt 337

                                                                       
Query: 359 acagcccttgaggtcatatgggcttgtaggttaatttggtatgactttaaaactgcagag 418
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acagtccttgaggtcatatgggcttgtaggttaatttggtatgactttaaaactgcagag 277

                                                                       
Query: 419 caagtggcattccttggaaggctctgacaagccttgcacattctaatttgattcctggca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 caagtggcattccttggaaggctctgacaagccttgcacattctaatttgattcctggca 217

                           
Query: 479 tcgtctgttcctccat 494
           ||||||||||||||||
Sbjct: 216 tcgtctgttcctccat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 895
Length adjustment: 10
Effective length of query: 484
Effective length of database: 885
Effective search space:   428340
Effective search space used:   428340
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)