Query= MSMg01no116_a23.b1 MSMg01no116_a23.b1 CHROMAT_FILE:
MSMg01no116_a23.b1 PHD_FILE: MSMg01no116_a23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:12 2005
(275 letters)
>mm_chr4_76103500_76104174
Length = 675
Score = 501 bits (259), Expect = e-146
Identities = 271/275 (98%)
Strand = Plus / Plus
Query: 1 accatccaatgtccttaggtggaatggtacctgaacccaccctaaatttcaagtccttac 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 accatccaatgtccttaggtggaatggtacctgaacccattctaaatttcaagtccttac 260
Query: 61 taccaatgtcttagcctctagtactgtctacatgaaactgcattttctttttccgacagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 taccaatgtcttagcctctagtactgtctacatgaaactgcattttctttttccaacagt 320
Query: 121 tacacaataaatgcatcaccatgcctaaaggaacctctcaccttatgcattgtttgactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacaataaatgcatcaccatgcctaaaggaacctctcaccttatgcattgtttgactt 380
Query: 181 tctgattctattgcccaaatataaacttcctttaccatctttagctactgaaacttgttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgattctattgcccaaatataaacttcctttaccatctttagctactgaaacttgttt 440
Query: 241 taaaaaaaaattgaacaccccgtttacacaatact 275
| |||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaaaaaaattgaacaccccgtttacacaatact 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space: 177156
Effective search space used: 177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no116_a23.g1 MSMg01no116_a23.g1 CHROMAT_FILE:
MSMg01no116_a23.g1 PHD_FILE: MSMg01no116_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:12 2005
(514 letters)
>mm_chr4_76173939_76174860
Length = 922
Score = 955 bits (494), Expect = 0.0
Identities = 512/522 (98%), Gaps = 8/522 (1%)
Strand = Plus / Minus
Query: 1 aattccttttactcccacagtcttgaacccttcaaggttacacatgagagctgcgatcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 722 aattccttttactcccacagtcttgaacccttcaaggttacacatgagagctgtgatcct 663
Query: 61 cttcctcctactcctgttttttgacttcattccaggagtcacaaacattcttaatggcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cttcctcctactcctgttttttgacttcattccaggagtcacaaacattcttaatggcat 603
Query: 121 ctaggtgaagtatcgtttccaggttttgagtgcccattccagactctcaagtctaatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ctaggtgaagtatcgtttccaggttttgagtgcccattccagactctcaagtctaatctc 543
Query: 181 catgtatatggactctaactttataaaatgtttttcctgttctctgggtactggtcattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 catgtatatggactctaactttataaaatgtttttcctgttctctgggtactggtcattg 483
Query: 241 aacctggtttattgtacatgctaacaaaaattctctcagcccacttactagaccatgcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aacctggtttattgtacatgctaacaaaaattctctcagcccacttactagaccatgcta 423
Query: 301 tttttaaataataagatctgactattgaaattattttttgatccacaaactgcagaatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tttttaaataataagatctgactattgaaattattttttgatccacaaactgcagaatgg 363
Query: 361 atgtagtgttttcagcatt-aaaaaaaaaatcaatctcattgaacattttctcaaagctt 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 atgtagtgttttcagcattaaaaaaaaaaatcaatctcattgaacattttctcaaagctt 303
Query: 420 ttatgtgatcaggtacatt-------gacagtaatattttaaaaggtttattttttttct 472
||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 302 ttatgtgatcaggtacattgtcaacagacagtaatattttaaaaggtttattttttttct 243
Query: 473 aagaagcaggccttaacattgagcttaaaatattttggtact 514
|||||||||| |||||||||||||||||||||||||||||||
Sbjct: 242 aagaagcaggtcttaacattgagcttaaaatattttggtact 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 922
Length adjustment: 10
Effective length of query: 504
Effective length of database: 912
Effective search space: 459648
Effective search space used: 459648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
