BAC Information

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BAC

Clone NameMSMg01-116F24
Chromosome4 (Build37)
Map Location 33,729,294 - 33,729,593
singlet/doubletsinglet
Overlap genenone
Upstream geneCasp8ap2, Mdn1, Lyrm2, Ankrd6, LOC665298, Rragd, 4933421O10Rik, Ube2j1, LOC100039142, Gabrr2, Gabrr1, Acy1l2, Srrp, Pnrc1, Rngtt
Downstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1, 1700003M02Rik, Gm136, 1810030N24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116F24.T7 (MSMg01no116_f24.b1)MSMg01-116F24.TJ (MSMg01no116_f24.g1)
ACCAG327772AG327773
length720717
length of high quality
(start - end)
572 (50 - 621)299 (74 - 372)
definitionCHROMAT_FILE: MSMg01no116_f24.b1 PHD_FILE: MSMg01no116_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:37 2005CHROMAT_FILE: MSMg01no116_f24.g1 PHD_FILE: MSMg01no116_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGAGGTAGTGAACGGAGGGGGGATTTTTGCCTGCTGAAGTT
AGCATCTAGCAGTGGACAGATGGGTCCTGGTTAATTTTTTGTCAACATGA
CACAGGTTAGCATCATTTGGGAATAGAAAACCTCAATTGAGAACATGTAG
CCCGTGGAAATGCTTGGGGGGCATTTTCTTGATTAATAATCAATGTAAGA
TCATTCCTACATGCCCCGGATCATCGTGGGCAACACCATTCCCAGGCAGG
TGAGCCTGAGTTGTTAAAACAGTGGGCTAAGCTACGCATAAGGAGCAAGT
CAGTAAGCAGCGCTTTTCTGTGGCTTCTGCTCCAGGTCCTGACTCCAGGT
GTCTGCCTTGAGTTCCTGCCTGACTTCCCTCAGTGATGGGATGACAACTG
AGAGCTGTAAGCTGAAATAAACCCTTTCCACCCCAAGTTAGTGTGGGTCA
TGGTGTTTATCACATCAACTAAAAAGCATCTAAGACAAGCATTTCACATG
TGACCACAATATCATAGTAAAGTCCACGGGTCTGACGTGTACATAAAGAT
GAGCCACGATGGACAGGAGGCCTGAGAATATCTTCCAAGTGTTCATTCCA
CACTGCTCCCTCCTCGTCAGTCACACTAAAACCCCCACATGGCTACTTGG
GCATTTGATTCTCTTTCTAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTCGTGGCAGCAGAGCAGAACAGAAC
ACCAGAAAGTTAATATGAGGTGTTCTCACACAGACCCCATCTCCCTGCAC
TCCTTTTTTTGAGGGTTCGCTTCTTATCACTCTCTTTACTCAGCCTTTGT
GCTAGATGCTAGCAAAATACAGAATCTTTAGCAGAGGCCAAGGCTTTAGA
GACAACTGCCTGGCAAAGGCATAGTCCAGGAAGTGGCTGCAGTTTTATAT
GCAACGAGTGTGAGGCAGGAGAACATGGAGGCAGTCTCCTTCAAGTTCAC
TTGTCAGGGTCACAAATGAGCTTGCGTTAGTGTCCGTGATGTTGCTGGGC
GTGCAAGCTCTCCGTAGGCCTGCATGCTGTCGGTTCAGTGACTGTGGACG
TGCCTTGAATGCCTGATGCGTAAGGAACAGCTACTGCCTGTGGTCCACTC
AGGCAAGTCATCACCAAACAACTGGAGGAGGATGGAGCTCATCGACTTGC
TCGACTTCCTTTACAGCCTGATGATTTGAGGGAAACTCCTGCTCTTTCCA
TGAGGGCTGTGCTGATAGCGCGTGTTGAATCACCGACAAAAGAGGATGGG
TTAGCTGTTCTTCATGGGCTGCTAGAGGAGCCCATGGCTGTAACTGTAAG
GCTAAAAGGTTAGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_f24.g1 MSMg01no116_f24.g1 CHROMAT_FILE:
MSMg01no116_f24.g1 PHD_FILE: MSMg01no116_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:37 2005
         (299 letters)



>mm_chr4_33729094_33729793
          Length = 700

 Score =  534 bits (276), Expect = e-156
 Identities = 294/300 (98%), Gaps = 1/300 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcgtggcagcagagcagaacagaacaccagaaagttaatatgaggtgttctcacacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcgtggcagcagagcagaacagaacaccagaaagttaatatgaggtgttctcacacag 260

                                                                       
Query: 61  accccatctccctgc-actcctttttttgagggttcgcttcttatcactctctttactca 119
           ||||||||||||||| || || |||||||||||||||||| ||| |||||||||||||||
Sbjct: 261 accccatctccctgcaacccccttttttgagggttcgctttttaccactctctttactca 320

                                                                       
Query: 120 gcctttgtgctagatgctagcaaaatacagaatctttagcagaggccaaggctttagaga 179
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gcctttgtgctagatgctagcaaaatacaaaatctttagcagaggccaaggctttagaga 380

                                                                       
Query: 180 caactgcctggcaaaggcatagtccaggaagtggctgcagttttatatgcaacgagtgtg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactgcctggcaaaggcatagtccaggaagtggctgcagttttatatgcaacgagtgtg 440

                                                                       
Query: 240 aggcaggagaacatggaggcagtctccttcaagttcacttgtcagggtcacaaatgagct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcaggagaacatggaggcagtctccttcaagttcacttgtcagggtcacaaatgagct 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 700
Length adjustment: 9
Effective length of query: 290
Effective length of database: 691
Effective search space:   200390
Effective search space used:   200390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)