Query= MSMg01no116_h07.b1 MSMg01no116_h07.b1 CHROMAT_FILE:
MSMg01no116_h07.b1 PHD_FILE: MSMg01no116_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:43 2005
(567 letters)
>mm_chr4_8674279_8675246
Length = 968
Score = 1036 bits (536), Expect = 0.0
Identities = 557/564 (98%), Gaps = 1/564 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggctctcc-gcgaaccctttatcttctgtgtgttcacttatcaccatgtggat 63
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggctcagcagcgaaccctttatcttctgtgtgttcacttatcaccatgtggat 264
Query: 64 tccgttcttgtcttgatagtactgtctccttggtgacagagtggcctctttctgggttgt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccgttcttgtcttgatagtactgtctccttggtgacagagtggcctctttctgggttgt 324
Query: 124 ggggagggtggtgatacactgtgttccagcggcagggcatgccttgggaaactgatgtat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggagggtggtgatacactgtgttccagcggcagggcatgccttgggaaactgatgtat 384
Query: 184 acttccctccatgcagagtctctgccagttcttttcaggacctttggaggtaaaggagag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acttccctccatgcagagtctctgccagttcttttcaggacctttggaggtaaaggagag 444
Query: 244 aagttgaggaagccacccacagtggagctagcagggagcccggaaatcctcagtatctca 303
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagttgagcaagccacccacagtggagctagcagggagcccggaaatcctcagtatctca 504
Query: 304 cgggcaaacaccctacaaaacttcatacttgccaaagtgtgcttgacattcagggaagag 363
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 505 cgggcaaacaccctacaaaacttcatacttgccaaagtgtgctggacattcagggaagag 564
Query: 364 ctctgctgtccgcgggcttgaactagaggaattatttgcatccgaaaggtgttttgaatt 423
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctctgctgtccgagggcttgaactagaggaattatttgcatccgaaaggtgttttgaatt 624
Query: 424 catccctttcctggataggtttctgatctgtgcctgtgaataaaacctctgcactgtggt 483
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgtccctttcctggataggtttctgatctgtgcctgtgaataaaacctctgcactgtggt 684
Query: 484 actgcattaaagctcgggcacaaaggcccgagaatttctagaatttctagaatctgcatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 actgcattaaagctcgggcacaaaggcccgagaatttctagaatttctagaatctgcatt 744
Query: 544 aagtagaacatcagtgtgacactg 567
||||||||||||||||||||||||
Sbjct: 745 aagtagaacatcagtgtgacactg 768
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 968
Length adjustment: 10
Effective length of query: 557
Effective length of database: 958
Effective search space: 533606
Effective search space used: 533606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_h07.g1 MSMg01no116_h07.g1 CHROMAT_FILE:
MSMg01no116_h07.g1 PHD_FILE: MSMg01no116_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:43 2005
(293 letters)
>mm_chr4_8749087_8749779
Length = 693
Score = 530 bits (274), Expect = e-155
Identities = 286/290 (98%)
Strand = Plus / Minus
Query: 1 tcttgtctttttccagatcttctactgacgcccactgacaatgaagacaggagctggaac 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 490 tcttgtctttttccagatcttctactgacgcccactgacaatgaagataggagctggaac 431
Query: 61 aggaaaggaatactcttaaaacatttagaaagaaatcatctaatttatgtcttactaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 aggaaaggaatactcttaaaacatttagaaagaaatcatctaatttatgtcttactaaaa 371
Query: 121 aaatcatcaaaagagaatacacacacacacacatacactcctacttaatgataatggata 180
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct: 370 aaatcatcaaaagagaatacacacacacacacacacacccctacttaatgataatggata 311
Query: 181 atgccaagcatccagcatagctactaacatttgaaaataaatgagaatcagtaatgtaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atgccaagcatccagcatagctactaacatttgaaaataaatgagaatcagtaatgtaat 251
Query: 241 agtactgaaagttgctatctgcctagcctcaggctttatccattacccat 290
|||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 250 agtactgaaagttgctatctgcctagcctcgggctttatccattacccat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
