BAC Information

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BAC

Clone NameMSMg01-116K20
Chromosome4 (Build37)
Map Location 55,726,330 - 55,803,264
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC384018, EG666920, Zfp462, LOC670211, Rad23b, LOC666953, LOC100041348, Klf4
Downstream geneActl7b, Actl7a, Ikbkap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116K20.T7 (MSMg01no116_k20.b1)MSMg01-116K20.TJ (MSMg01no116_k20.g1)
ACCAG327999AG328000
length697800
length of high quality
(start - end)
468 (83 - 550)124 (130 - 253)
definitionCHROMAT_FILE: MSMg01no116_k20.b1 PHD_FILE: MSMg01no116_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:00 2005CHROMAT_FILE: MSMg01no116_k20.g1 PHD_FILE: MSMg01no116_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,726,330 - 55,726,797)(55,803,141 - 55,803,264)
sequence
CAACAAAAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAA
GAGGATCCGCGGAATTCTAATTGTTCGAACCAGCAAGAGCCAGAAGCTCT
AACTCTAGCTATGCCAAAGCTGCTCGTTTACCACAAGGAGAGAAGATTCT
GGAGCTCCCTGTCTGAGATCCTCTGACTTAAATTTTTCTCATTTCTAGTT
GGGGAAATGGTACAGTGATGGCTAAGGAGTCATGAGGACCTAATTTAGGA
TCCCATGTAAGAGTGTTGCATGTAAAGAGAACTCGTCTGCAATTTCAGAG
CTGGGGAGGTGGGGTCAGGAGAACTTGCTCTCCAGCTACTTTAGTTAATT
GGTGAGCTTCAGTGAGAGACACCCCCAACCCCATCTCCCAAATAAGATGG
AGGGTGATCAATGAAGATACCTGATAGTTGCCTTTGGCCTCCACATACAT
ACATGTGAACATGTACACATGCGCGTGCACACACACACACACACGATGGA
AGTGTTGAATCTCTACTGCTATGCTGTGATTGGTAATGACCTGACATTTA
TGAGGCGCCAGACTCCACAGTGGTTGATTAGCATCAATATCTTCTTTAAC
TCTGACTACAACTCTGTTAAGCACATTGTCGCTCTTCCCATTTTGTATAT
GTAAGCCTAAAGTACGCACACCTGATAGTCCACCTATTCTAAGAACC
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCGGATGTGCCAAGATGTTCTGTCCTGTTCCT
CCTAATGGTCAGATTAACCTACACCCATCAGAATGCTAAACACACTTAGC
CCACTCAGCAAAGGCTTCAGGTTACAACAGAGGAAGGCAGAGAAAACATG
AATACCAAGGAGAGGGGGAGACAGAACGCAAACAGAAAAGGAGAGGAAGA
AGGGAAGCCCAGGACAGAGGGGAGAAAGACAGAAATCCAGAGGAAGAGAG
GAGAGGTTTGTAGAGGGGAAGGCAAGGGAAGGACAGGGAAGGGAGGGGAG
GGGAGGTCAGGGAGCACCCCCCGGCGCTTCCGCGTGACGCAATGCCCCAC
ACCCACTCGCGTCCCCACGCCAAAAAAAAACTACGCCCCCCCCCCCCCCT
ACCCCCCATCCCCTTTTTTAACTCGCCGCGGTCGGTCTTTCACACCCAAC
TAACCTAACAGCATACCACCCCATATACTCTTCACCCCCCCGTCCCCCCC
CCACCCCCTGCAGTGCCTCCCCCTCAGCCTTTCCCTCCGCACCCCTTCCT
CTTTACCCCCCCCCCTCTCCCCCCCCGCTTCGTCAAACACCGCTACCACC
CCTTTTATCTCCAACCCACACCGCCCGCACCCCCTATCCACCTCGGTGGG
TAACGGGAAGGCGCGGCCATGCTAGCAGGCGCGTCCCCCCGGCGCCACCG
CGCGACCGCCCGTCGCTTTCTCGGCGGCCCCCCTACCCATCGTCCCGCCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_k20.b1 MSMg01no116_k20.b1 CHROMAT_FILE:
MSMg01no116_k20.b1 PHD_FILE: MSMg01no116_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:00 2005
         (468 letters)



>mm_chr4_55726130_55726997
          Length = 868

 Score =  897 bits (464), Expect = 0.0
 Identities = 467/468 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaagagccagaagctctaactctagctatgccaaagctgctcgtttaccacaaggagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 gcaagagccagaagctctaactctagctatgccaaagctgctcgtttaccaaaaggagag 260

                                                                       
Query: 61  aagattctggagctccctgtctgagatcctctgacttaaatttttctcatttctagttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagattctggagctccctgtctgagatcctctgacttaaatttttctcatttctagttgg 320

                                                                       
Query: 121 ggaaatggtacagtgatggctaaggagtcatgaggacctaatttaggatcccatgtaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaatggtacagtgatggctaaggagtcatgaggacctaatttaggatcccatgtaaga 380

                                                                       
Query: 181 gtgttgcatgtaaagagaactcgtctgcaatttcagagctggggaggtggggtcaggaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttgcatgtaaagagaactcgtctgcaatttcagagctggggaggtggggtcaggaga 440

                                                                       
Query: 241 acttgctctccagctactttagttaattggtgagcttcagtgagagacacccccaacccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttgctctccagctactttagttaattggtgagcttcagtgagagacacccccaacccc 500

                                                                       
Query: 301 atctcccaaataagatggagggtgatcaatgaagatacctgatagttgcctttggcctcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctcccaaataagatggagggtgatcaatgaagatacctgatagttgcctttggcctcc 560

                                                                       
Query: 361 acatacatacatgtgaacatgtacacatgcgcgtgcacacacacacacacacgatggaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acatacatacatgtgaacatgtacacatgcgcgtgcacacacacacacacacgatggaag 620

                                                           
Query: 421 tgttgaatctctactgctatgctgtgattggtaatgacctgacattta 468
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgttgaatctctactgctatgctgtgattggtaatgacctgacattta 668


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space:   392964
Effective search space used:   392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no116_k20.g1 MSMg01no116_k20.g1 CHROMAT_FILE:
MSMg01no116_k20.g1 PHD_FILE: MSMg01no116_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:00 2005
         (124 letters)



>mm_chr4_55802941_55803464
          Length = 524

 Score =  232 bits (120), Expect = 5e-66
 Identities = 123/124 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaatgctaaacacacttagcccactcagcaaaggcttcaggttacaacagaggaaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaatgctaaacacacttagcccactcagcaaaggcttcaggttacaacagaggaaggca 265

                                                                       
Query: 61  gagaaaacatgaataccaaggagagggggagacagaacgcaaacagaaaaggagaggaag 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagaaaacatgaataccaaggaaagggggagacagaacgcaaacagaaaaggagaggaag 205

               
Query: 121 aagg 124
           ||||
Sbjct: 204 aagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)