Query= MSMg01no116_l01.b1 MSMg01no116_l01.b1 CHROMAT_FILE:
MSMg01no116_l01.b1 PHD_FILE: MSMg01no116_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:01 2005
(369 letters)
>mm_chr4_6284648_6285418
Length = 771
Score = 555 bits (287), Expect = e-162
Identities = 328/345 (95%), Gaps = 8/345 (2%)
Strand = Plus / Minus
Query: 29 ctcttttattattttatttattcttactattttatgtgcatcggtgtttgcctgcgtgtt 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 ctcttttattattttatttattcttactattttatgtgcatcggtgtttgcctgcgtgtt 712
Query: 89 tgtctgtttgagagtgtcagatctgatggcact--agttataaacagttgtgtgatgagc 146
|||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 711 tgtc----tgagagtgtcagatctgatggcactagagttatagacagttgtgtgatgagc 656
Query: 147 tgctatgtgggtactaggaattgaactcagattctctggaagagtggtcaggtctcttaa 206
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 655 tgctatgagggtactaggaattgaactcagattctctggaagagtggtcagttctcttaa 596
Query: 207 ccactgggccgtccctgtagcctcctacaattattttattaatggaactaagaggtagcc 266
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ccactgggccttcccagtagcctcctacaattattttattaatggaactaagaggtagcc 536
Query: 267 ctggttaccttggaatcatctagtgatcctaaagggattcccccc--aaaatcaagtatc 324
|||||||||||||| ||||||||||||||||||||||| |||||| |||||| ||||||
Sbjct: 535 ctggttaccttggagtcatctagtgatcctaaagggatcccccccccaaaatctagtatc 476
Query: 325 aaccatggtttggctacagataggattttcagtaacttgatgtaa 369
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaccacggtttggctacagataggattttcagtaacttgatgtaa 431
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 771
Length adjustment: 9
Effective length of query: 360
Effective length of database: 762
Effective search space: 274320
Effective search space used: 274320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_l01.g1 MSMg01no116_l01.g1 CHROMAT_FILE:
MSMg01no116_l01.g1 PHD_FILE: MSMg01no116_l01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:01 2005
(229 letters)
>mm_chr4_6155120_6155749
Length = 630
Score = 408 bits (211), Expect = e-118
Identities = 223/227 (98%), Gaps = 1/227 (0%)
Strand = Plus / Plus
Query: 1 agcataggagttgagtatcctaaattcctcc-accaccaatgtactaggctccatcagag 59
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agcataggagttgagtatcctaaattcctcataccaccaatgtactaggctccatcagag 260
Query: 60 aaagaggcctaacaggaaatgcacatgtgtgcacatactcatttagcattattaaactag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaagaggcctaacaggaaatgcacatgtgtgcacatactcatttagcattattaaactag 320
Query: 120 cttataaaatcataagctaaatagtactactggcgttttctgtatcctggaaagctggtg 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 321 cttataaaatcataagctaaatagtactactggcgttttctgtaacctggaaagctgctg 380
Query: 180 aacatagtagctgctcgttcatggaaataggaattctgagaataatg 226
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatagtagctgctcgttcatggaaataggaattctgagaataatg 427
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 630
Length adjustment: 9
Effective length of query: 220
Effective length of database: 621
Effective search space: 136620
Effective search space used: 136620
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
