BAC Information

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BAC

Clone NameMSMg01-116M06
Chromosome4 (Build37)
Map Location 117,113,378 - 117,113,739
singlet/doubletsinglet
Overlap gene4931406I20Rik
Upstream geneMast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53
Downstream geneLOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3, Jmjd2a, Ptprf, Hyi, BC059842, Med8, Elovl1, Cdc20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116M06.T7 (MSMg01no116_m06.b1)MSMg01-116M06.TJ (MSMg01no116_m06.g1)
ACCAG328066AG328067
length712724
length of high quality
(start - end)
480 (86 - 565)346 (79 - 424)
definitionCHROMAT_FILE: MSMg01no116_m06.b1 PHD_FILE: MSMg01no116_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:06 2005CHROMAT_FILE: MSMg01no116_m06.g1 PHD_FILE: MSMg01no116_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAAGAGCGC
GGAATTCAGCATAGCTTCACACTATTAGGTTATTCAACATCAGCAGAAAA
ATTACATGTACGTGCGGGGTGTCAGAGTTCTGTGAGTTGTTGACTCAGTT
CAGATAGCCCTGTTATGTCCTCACATCCCCTTTATCTTATGGTCAAGCTG
TTCCCAGGAATGTTTTAACTACGGGGCATGCCCGGGTTTGTTTTTCTTTT
TTCTCAGCCCCAGGCAGCCTCTAGGCTCACAAACAACCAGCAATTTCTGA
GTACTTTATATGACTTACAGGTCTTGAATTTTCATCTTTCTTTCACCAGG
CACCTGTAATTGGAGTTCCAGGGAATCCACCGCCCCCTTCTGGCCTCTGA
GCACCAGACACACACACGGTGCACAAACGTAAAATAGAAATAAGCAAGTG
AAAGCACAGAGCTGAGAGGTCCGAGCTCACCTGCCTTGTGGTTTGTCTGT
GCCTTTGCTGCCACGGCCCCAAAATTGTTGCCTAGTTATGGTCATGGAGA
TGTGCTCCTCTCTAAAAAAAGATTTTATTCTATGTGTTTTGCCTACCTGC
TTGTCTGTGCACCACTTGTGTGCCTGGCACCCACAGAGCTCAAAAGACGG
CATTGGATCCCCTGGAACTGTGGTTAAAGATGGTTGTGAGCTGCTATGTG
GGTGCTGGAAAT
NNTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAAAATGGAAACGTCCAGA
GATGGTAGAAAATTGGGCACAGTAAATCTGTTATGATAGGGTCGTCAACG
TTACTCTTAGAGAACTGTGTATGTCTTGGGTTTGTTTCCCCCGCCCCTTT
AAGGTCAGTAGAAATCCAAAGAGATTTAACATTGTACCCAGGGGAGGGTA
CTGCTGATAGAACCTTAGATGGGTCAGCCTTAGGGGAGGGCAAGTCGCCT
GTCAACTTCTGCAAGCGCCCACAGAACATACCTTGTGAAGAGGTCAGGGC
AGAATGGACTACTGGATTACAGTATTTCTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTCGTTCCTTTAAATAAACATTCCTTATCTT
TGTCCTTCCCTTTCCCTTACTCCTCTTTCTTTTCACCTTATTTCTTACCA
CTTTCCTCCTTACCCAACATTACTATTTTTATTTACCCTTCACCTTCCCT
TTATCTTTTTACACTTTCATCTTTCTTTCTTTATTAATCTACCTTTCTTC
TTTAATCTTTTATTTTTCCCTTTTTTAATACCCTCTACCATTCATACCTA
CTTTTCAAATCATTATTCATATTTTCCTTTTCTTCTATTCCCCTTACTCT
TTATCTACCTCATCCACCTACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_m06.g1 MSMg01no116_m06.g1 CHROMAT_FILE:
MSMg01no116_m06.g1 PHD_FILE: MSMg01no116_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:07 2005
         (346 letters)



>mm_chr4_117113233_117113985
          Length = 753

 Score =  551 bits (285), Expect = e-161
 Identities = 333/363 (91%), Gaps = 25/363 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctaaaatggaaacgtccagagatggtagaaaattgggcacagtaaatctgttatgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttctaaaatggaaacgtccagagatggtagaaaattgggcacagtaaatctgttatgata 448

                                                                       
Query: 61  gggtcgtcaacgttactcttagagaactgtgtatgtcttgggtttgtttc-----ccccg 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||     |||| 
Sbjct: 447 gggtcgtcaacgttactcttagagaactgtgtatgtcttgggtttgtttctcccccccct 388

                                                                       
Query: 116 cccc---tttaaggtcagtagaaatccaaagagatttaacattgtacccaggggagggta 172
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccccccttttaaggtcagtagaaatccaaagagatttaacattgtacccaggggagggta 328

                                                                       
Query: 173 ctgctgatagaaccttagatgggtcagccttaggggagggcaagtcgcctgtcaacttct 232
           |||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct: 327 ctgctggtagaaccttagatggttcagccttaggggagggcaagttgcctgtcaact-ct 269

                                                                       
Query: 233 gcaagcgcccacagaacataccttgtgaagaggtcagggcagaatggactactggattac 292
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 268 gcaagcgcccacagaacataccttgtgaagaggtcagggcagaatggactactggactac 209

                                                                       
Query: 293 agtatttct----------------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 336
           |||||||||                |||||||||||||||||||||||||||||||||||
Sbjct: 208 agtatttctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 149

              
Query: 337 tgt 339
           |||
Sbjct: 148 tgt 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 753
Length adjustment: 9
Effective length of query: 337
Effective length of database: 744
Effective search space:   250728
Effective search space used:   250728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)