BAC Information

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BAC

Clone NameMSMg01-116N14
Chromosome4 (Build37)
Map Location 96,013,422 - 96,013,802
singlet/doubletsinglet
Overlap geneCyp2j11
Upstream gene2310009E04Rik, Hook1, Cyp2j13, LOC242546, LOC546837
Downstream geneLOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-116N14.T7 (MSMg01no116_n14.b1)MSMg01-116N14.TJ (MSMg01no116_n14.g1)
ACCAG328129AG328130
length704704
length of high quality
(start - end)
477 (50 - 526)488 (83 - 570)
definitionCHROMAT_FILE: MSMg01no116_n14.b1 PHD_FILE: MSMg01no116_n14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:13 2005CHROMAT_FILE: MSMg01no116_n14.g1 PHD_FILE: MSMg01no116_n14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCNAAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAT
CCGCGGAATTCTTTAATTTCCTTCTTTCTTTTCTTACGAAGTTATCACTG
AGTAGAGAATTGTCCGGCTTCCATGTGTATGTAGGCTTTCAAGTTGTTTT
TGCTGTTATGAAGAAAAGCCTTAGTCCATCATGGTCCAATAGAATACATG
GGATTAATTCAATGTTCTTGTATCTGTTGAGTTTTGTATCTGACAATATG
GTTGATATTTAAGAAGGTACCATAAAGTGCCGAGAAGAAAGTATATATTT
TTTTTTGTTTTAGGGTGAAATGTTCTGTAGATACCTGTTAAATATATTTG
GTTCATAAGTTCTACTAGTTTCATTTTATCTCTGTTTAGTTTCTGTTTCC
ATGATCTGTCTACTGTTGAGAGCAGGCTGTTCAAATCGCCTACTATTATT
GTGTGAAGTTCAATGTGTGCTTTGAGCTTCAGTAATATTTCTTTTAAAAA
TGTGGGTATCTTTGCATGTGGAGTATAGATGTTTAGAATTGAGAGCTCAT
TTTGGTAGATTTTTTTTTCCTTTGATGAGTCTGTAGTGTCCTTCCCATCT
TTTTTGTTAACTTTTGATTGAAAATCTATTTATTGAAAATTAGAGTGGCT
AATCCAGATTGTTTCTTGAGACTATTTGCTTGGAATTTTTTTTCCGCATT
TTAC
TTCCCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCC
CCATTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTC
TTTATATATGTTGGATATTAGTCCCCTATCTGATCTGATCTGTCTTTTTT
CTAACCCTTCAAGTTCACAGCTTTCTTTCTGATGAAAAGCACTTCCTTTC
TCCATTCCTTCAGAGGGGGCACAGCAGAACGAAATATCTTTTCCCACCTC
AGAATGATTCTCCTCTCCATGCCCACACTGGCTTTTCCCTTTTTATGGGA
CACTAGGTTGATGAAATGCTTCCCTTAACTCTTTTACATAGTCCTGCTTT
GTTCTGGCCTTTGTAGTTTGCCCATAAGTGATACAACATTTATTTTTCTC
TCTGCTTTCAAGAGATTTCCTGTTTTTGATTAAAATTGATTGTGGTGATT
TTGCATGATCAAGCTTGTGGCTTTATGTTGTTGAGTTTTTTGTAGCAGGG
TTGTATTTTGCACCACTGGGGAGTTTCTACCATTCTTAAAGTATATTCTC
ATCTACGCTGTCTCTTTCCTGGTTTGGTTGACAGAGGTACAGCTGTAAAT
CTCTGTGAGTGTGGTTGTGTTAAATCAGTAAAGTTTTCTCTTGACTGTCA
ACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no116_n14.g1 MSMg01no116_n14.g1 CHROMAT_FILE:
MSMg01no116_n14.g1 PHD_FILE: MSMg01no116_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:13 2005
         (488 letters)



>mm_chr4_96013106_96013993
          Length = 888

 Score =  714 bits (369), Expect = 0.0
 Identities = 378/381 (99%)
 Strand = Plus / Minus

                                                                       
Query: 108 ctgtcttttttctaacccttcaagttcacagctttctttctgatgaaaagcacttccttt 167
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 697 ctgtcttttttctaacccttcaagttcacagctttctttctgacgaaaagcacttccttt 638

                                                                       
Query: 168 ctccattccttcagagggggcacagcagaacgaaatatcttttcccacctcagaatgatt 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ctccattccttcagagggggcacagcagaacgaaatatcttttcccacctcagaatgatt 578

                                                                       
Query: 228 ctcctctccatgcccacactggcttttccctttttatgggacactaggttgatgaaatgc 287
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 ctcccctccatgcccacactggcttttccctttttatgggacactaggttgatgaaatgc 518

                                                                       
Query: 288 ttcccttaactcttttacatagtcctgctttgttctggcctttgtagtttgcccataagt 347
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ttcccttaacccttttacatagtcctgctttgttctggcctttgtagtttgcccataagt 458

                                                                       
Query: 348 gatacaacatttatttttctctctgctttcaagagatttcctgtttttgattaaaattga 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gatacaacatttatttttctctctgctttcaagagatttcctgtttttgattaaaattga 398

                                                                       
Query: 408 ttgtggtgattttgcatgatcaagcttgtggctttatgttgttgagttttttgtagcagg 467
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttgtggtgattttgcatgatcaagcttgtggctttatgttgttgagttttttgtagcagg 338

                                
Query: 468 gttgtattttgcaccactggg 488
           |||||||||||||||||||||
Sbjct: 337 gttgtattttgcaccactggg 317


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)