BAC Information

Click to search

BAC

Clone NameMSMg01-117D02
Chromosome4 (Build37)
Map Location 111,561,532 - 111,561,671
singlet/doubletsinglet
Overlap geneSlc5a9
Upstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612
Downstream geneLOC639774, C130057D23Rik, LOC639781, 9530098N22Rik, A430090E18Rik, A030013N09Rik, LOC665949, LOC630887, OTTMUSG00000008540, LOC100040581, A030001H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117D02.T7 (MSMg01no117_d02.b1)MSMg01-117D02.TJ (MSMg01no117_d02.g1)
ACCAG328387AG328388
length707710
length of high quality
(start - end)
140 (195 - 334)226 (77 - 302)
definitionCHROMAT_FILE: MSMg01no117_d02.b1 PHD_FILE: MSMg01no117_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:39 2005CHROMAT_FILE: MSMg01no117_d02.g1 PHD_FILE: MSMg01no117_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:23:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAAT
TCGCATGGAGTCCACTATGGGGGGAAGGTCAAGAATACAAAACTGAGAAT
TCTGCAGTGTTCCACATAAAGAACACTGATGACTTGACCAGACCAGTGGT
TTTAGAGATGAAGAAAGAGCATTCGAAGACATTGGTGAAGTAGTACTGGC
ACAATTTGATTACACAGTATTCATTAGTAACTAGAAAGACATAACCAAAG
ATGGTTCCAATTCTTGATCTTCAGAGGCGATATTTCGTCAAGGAACTGGA
AGGCAGTATATGAGCAGTTGTTGCTTCCCTTTAGTAGTTACAACCAGTCA
GAGAAACAGCAGAGATAATGAAGGTCCACCTAAGGTCAAGTAGTTAACAA
AAAGAACGAAGGGAAAGAAATGAGAGAAGGGTCTAGGATAATGCTGATAT
CTGAGGGAAAACAATAAGCCATTATTAGCCTGAGGGAAGCAAAGAACTGA
GGAAGACACCTCACTTTGGGACCTTTGAGCACTCAAGTGCTCTCAAGGCG
TCCAGGGAGACACTAAGACTTGATTAAACATGCACATTTGAGGAAAAAAG
GGCCTGAGTGGGCTGGACAACTACTGAGACTGGTGTCATCTCCCCAATGT
TGAAAGTTCATTTCCAGAAGCTTGACCATCCCATGTAGAAACTTTAAATA
TTACTAC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGATGGTCCCCATTTTT
AAATTAGGGTTTTGTTTTTGATGTCTAGTTTTCATTTTTGTTCTTTATTT
ATTTTCAGTATTATCCCTCTATCAGATGTGCAGTTGGTAGAGATCCTCCT
TTACTATTGCATAGCTCCTTTTCCGAAATGACAGTGTCCTTTGCTTTTCA
TTTTTATGACTTCACATTTATTAACTCTTCTTAGTACTCATGTTGATAGT
GTTTTGTCCAGAGAGTATTTTCCTGTAGAGCAACCTCCTAGCCTGACCTT
TCTTTTAGTCCCTCTGTTTAATGGAAAAGCCTTAATGTTTTGTTTTTGTT
TTAATGCTCGCATCATTTTTGCATCTTAACCTTATACCATTTATGTTTTT
AAAAACTTTTTCTGACTCTGTATCTCTTAATTTCTGTTCTCAAAACAGTT
CTTTCCTAACAACTCTTTCATTTTTTTTCCTTACAGCTCCTCAGTTTCTA
AAGGGTAAATGGTAAAATTTTATATTTTTCTGTTCAGAATTTATAGTTTT
ACATATACCCATGCTTTATATACAGCATGCACGTATATCCCTGTAACCAT
GGGAATTAATCTTCCTAGCATCTATTACCTTACATATCCTTCCTGACGAG
AACCTTTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_d02.b1 MSMg01no117_d02.b1 CHROMAT_FILE:
MSMg01no117_d02.b1 PHD_FILE: MSMg01no117_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:23:39 2005
         (140 letters)



>mm_chr4_111561332_111561871
          Length = 540

 Score =  263 bits (136), Expect = 3e-75
 Identities = 139/140 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggcacaatttgattacacagtattcattagtaactagaaagacataaccaaagatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 actggcacaatttgattacacagtattcattagtaactagaaagacataaccaaagatgg 281

                                                                       
Query: 61  ttccaattcttgatcttcagaggcgatatttcgtcaaggaactggaaggcagtatatgag 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttccaattcttgatcttcagaggtgatatttcgtcaaggaactggaaggcagtatatgag 221

                               
Query: 121 cagttgttgcttccctttag 140
           ||||||||||||||||||||
Sbjct: 220 cagttgttgcttccctttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)