Query= MSMg01no117_g24.b1 MSMg01no117_g24.b1 CHROMAT_FILE:
MSMg01no117_g24.b1 PHD_FILE: MSMg01no117_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:00 2005
(476 letters)
>mm_chr4_126773318_126774193
Length = 876
Score = 841 bits (435), Expect = 0.0
Identities = 469/483 (97%), Gaps = 8/483 (1%)
Strand = Plus / Plus
Query: 1 atcatcatgttgtaatacttttggtacttattaggtactgtttactgtaataaataaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatcatgttgtaatacttttggtacttattaggtactgtttactgtaataaataaaag 260
Query: 61 tctcgttaagtatgacgtttgtttcagttttaattattactggttgagatttctttttat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcgttaagtatgacgtttgtttcagttttaattattactggttgagatttctttttat 320
Query: 121 tctttgtgtttatatgtatatgggcatgcatatgtgagctgttgggaggcttcatcagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttgtgtttatatgtatatgggcatgcatatgtgagctgttgggaggcttcatcagtt 380
Query: 181 actctgtaccttattcgctgaggctgggtttctcagttgtgtaacttaaaatttttttt- 239
||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 actctgtaccttatttgctaaggctaggtttctcagttgtgtaacttaaaattttttttt 440
Query: 240 aatgtttattatttatttattt----ttggtttttcgagacagggtttctctgtataccc 295
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgtttattatttatttatttatttttggtttttcgagacagggtttctctgtataccc 500
Query: 296 tggctgtcctggaactcactttgtagaccaggctggcctcgaactcagaaatccgcctgc 355
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 tggctgtcctggaactcactttgtagaccaggctggccttgaactcagaaatccgcctgc 560
Query: 356 ctctgcctcccgagtgctgggattaaaggcgtgcaccaccatgcctggctttaacgttta 415
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgcctcctgagtgctgggattaaaggcgtgcaccaccatgcctggctttaacgttta 620
Query: 416 tttttaatgacggtttaaaaaaatgctttaatc--ccttttagcccaccacccaccaaag 473
|||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 621 tttttaatgatggtttaaaaaa-tgctttaatctcccttttagcccaccacccaccaaag 679
Query: 474 gta 476
|||
Sbjct: 680 gta 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no117_g24.g1 MSMg01no117_g24.g1 CHROMAT_FILE:
MSMg01no117_g24.g1 PHD_FILE: MSMg01no117_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:00 2005
(557 letters)
>mm_chr4_126891830_126892786
Length = 957
Score = 1062 bits (549), Expect = 0.0
Identities = 555/557 (99%)
Strand = Plus / Minus
Query: 1 tcttcgactcctgttctcggtgtccgagtctgagattgtctccacctggtggcagggtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tcttcgactcctgttctcggtgtccgagtctgagattgtctccacctggtggcagggtgg 698
Query: 61 aggcgtcagtggctgtggctagccaaagaaacaaatggtccacatagaactagaatggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aggcgtcagtggctgtggctagccaaagaaacaaatggtccacatagaactagaatggcc 638
Query: 121 agaagtggctaggtaccaagctagctggcaaatcccaaacaaatgatacccagggaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agaagtggctaggtaccaagctagctggcaaatcccaaacaaatgatacccagggaagga 578
Query: 181 cgatgggctatttagagacaaacctcgtctatcaatgaggaagatgggtccacttacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cgatgggctatttagagacaaacctcgtctatcaatgaggaagatgggtccacttacagc 518
Query: 241 ccagggaaatttgtttgttaaggtctgtgtatgcattagtcctttttgatttccctccat 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 517 ccagggaaatttgtttgttaaggtctgtgtatgcattagtcccttttgatttccctccat 458
Query: 301 ccattcccaacgacatagagccagagcctattactgccaactatacctgcaccccaatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ccattcccaacgacatagagccagagcctattactgccaactatacctgcaccccaatgg 398
Query: 361 acggccgccacttccgctgtcgtgccaagctccgcagctcctcccggccagggatggtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acggccgccacttccgctgtcgtgccaagctccgcagctcctcccggccagggatggtct 338
Query: 421 tgatgatgagtgtggggggcttgggactggctcggggtggcaccggtgccaactcgaggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tgatgatgagtgtggggggcttgggactggctcggggtggcaccggtgccaactcgaggg 278
Query: 481 tgcgtgcgcccatggtggggccgtccagcccgtccgcggagctgcagcgccgggccgggc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgcgtgcgcccatggtggggccgtccagcccgtccgcggagctgcagcgccgggccgggc 218
Query: 541 cctctgctgccgtgaag 557
|||||||||| ||||||
Sbjct: 217 cctctgctgcggtgaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
