CCCCTTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGATGCCTACCGAATGGCAGAGAAGCACTTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGAGTGCAGGCTCGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT
TCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCC
CCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAA
ACTCA

GGGGNGGCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGCAGGTAGCATCTAGGA
CACAGACCAAACTGAAGAAGGAGGGATGAATTTGGACAGAAGCAAAATGC
GTGTAAGCCACAGGTCACCTTTCTTCTGTTTTTATTCCTCCTGTATTATT
AATTTTTAACTCTGACCCCCACCCTGCATTTCCTGTTGTGTAGAAGAGTG
TGGCTGTTAGGACCTGGCAGCTCCTACTTTCCTGACTTCCATAGGGTCTG
CCAGGCCCATCCATCTCCGATTTGGAACCCCAGGACCTGCATTAGCTGAT
ATAGATTCCAACATGCTGCTCTTTCTCCCCCAGGTTTCCTTCCAATCCAG
TTTCTGAGATGCCTCAACTGTCTCTTGTCAGTGTGGCCCATGCTGACTCT
GGTGGCATGTGTGTGTGTCCCAAGTGCCTCTGTGTCATCCTATCTGAAAC
CACACAATCACCTGTTGTCATCTCCAGGTACTATTAGAGGAAACTAAGAT
GGACCTATCACTAGGAAACAGAGAAGTGATCCACCAGGATCACAGGGCAG
GTGTGGGGATGATTGAGAATGGTTTTTTACAACCAGAGAATGAATGGTTC
TTTCCTATCAGTCCCCTGAGCTTCCTCCAGTGTTTGGACCCCCTTC

Query= MSMg01no117_i02.g1 MSMg01no117_i02.g1 CHROMAT_FILE:
MSMg01no117_i02.g1 PHD_FILE: MSMg01no117_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:05 2005
         (556 letters)



>mm_chr4_109643263_109644218
          Length = 956

 Score =  998 bits (516), Expect = 0.0
 Identities = 546/556 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcaggtagcatctaggacacagaccaaactgaagaaggagggatgaatttggacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 acagcaggtagcatctaggacacagaccaaactgaagaaggagggatgaatttggacaga 697

                                                                       
Query: 61  agcaaaatgcgtgtaagccacaggtcacctttcttctgtttttattcctcctgtattatt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 696 agcaaaatgcgtgtaagccacaggtcacctttcttctgtttatattcctcctgtattatt 637

                                                                       
Query: 121 aatttttaactctgacccccaccctgcatttcctgttgtgtagaagagtgtggctgttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aatttttaactctgacccccaccctgcatttcctgttgtgtagaagagtgtggctgttag 577

                                                                       
Query: 181 gacctggcagctcctactttcctgacttccatagggtctgccaggcccatccatctccga 240
           |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 576 gacctggcagctcctacttttctgacttccatagggtctgccaggcccacccatctccga 517

                                                                       
Query: 241 tttggaaccccaggacctgcattagctgatatagattccaacatgctgctctttctcccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tttggaaccccaggacctgcattagctgatatagattccaacatgctgctctttctcccc 457

                                                                       
Query: 301 caggtttccttccaatccagtttctgagatgcctcaactgtctcttgtcagtgtggccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caggtttccttccaatccagtttctgagatgcctcaactgtctcttgtcagtgtggccca 397

                                                                       
Query: 361 tgctgactctggtggcatgtgtgtgtgtcccaagtgcctctgtgtcatcctatctgaaac 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 396 tgctgactctggtggcatgtgtgtgtgtcccaagtgcctctgtgttatcctatctgaaac 337

                                                                       
Query: 421 cacacaatcacctgttgtcatctccaggtactattagaggaaactaagatggacctatca 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 336 cacacaatcacctgttgtcatctccagttactattagaggaaactaagatggagctatca 277

                                                                       
Query: 481 ctaggaaacagagaagtgatccaccaggatcacagggcaggtgtggggatgattgagaat 540
            ||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct: 276 ataggaaacagagaagtgatccgccaggatcacagggcaggtgtgaggatggttgagaat 217

                           
Query: 541 ggttttttacaaccag 556
           ||||||||||||||||
Sbjct: 216 ggttttttacaaccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)