BAC Information

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BAC

Clone NameMSMg01-117K04
Chromosome4 (Build37)
Map Location 90,316,078 - 90,316,594
singlet/doubletsinglet
Overlap genenone
Upstream geneDmrta1, Zfp352, LOC619842, LOC435792
Downstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-117K04.T7 (MSMg01no117_k04.b1)MSMg01-117K04.TJ (MSMg01no117_k04.g1)
ACCAG328716AG328717
length696687
length of high quality
(start - end)
362 (80 - 441)522 (83 - 604)
definitionCHROMAT_FILE: MSMg01no117_k04.b1 PHD_FILE: MSMg01no117_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:15 2005CHROMAT_FILE: MSMg01no117_k04.g1 PHD_FILE: MSMg01no117_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTTCCTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGCCGCGGAATTCTCACCTGTTCCATACCGAATGGCAGAGAAGCACTT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGC
GGTTCCTCAGAAAACTGGATATAGTACTACCATAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAATCTGGAAAG
AATCTAGATGCCCCTCAACAGAGGAATGGATACCGAAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGTATCATCCTTGAGTGAGGTAACA
CACTCACAAAGAAACTTCCACAACATGTATTCACTGATAAGTGGATATTA
GCCCCAATCCCATGATACCCCAGATACTATATATAATTTGCTAAAC
TTAAAATAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCATAAGATCTGTAT
CGAAGTATCTAAATTGGATGACTTAAAGAATGTGTATTAAGTATTGCCTT
AAAATAGATGATTATTTCCTCTTAGCTGATAACATTTAATCCTTTAATCT
TATAGTTCATACCTTTTAATTAAATAGTATAATTAATGACCTTTGCTGAA
ATTATTTTTTGTCTCAGTCTTTCAGTAATAATAGTTCTTAAAACACCAGG
TTTACCATGAGCTGAGCACTTTGAATGGGATAATTTTCTTAGATGGTAGG
AAAATGTTTCTTTCTTTTTTTCACCTCTTCTCAGCCTAGAAATATACAAG
ACTCACTAAACACTAACAAATAAGAGGGAGCACACTAATTTAGGTTGTTT
AATGGAGGCTTGAGATTTCAGAGGAATGCAAAGTTTTAAGAGCTATACAC
AAGCCATTTGTATGTAGAAGATAGAATTTATTTACTTCCCATAAGCCCCA
AGCCAGCTTTGTTATTCTCAAAAACTTCCAAACTTTGTTTGCTAAAGAAT
AAGGCACAGGGAGCCAGGCACAACAGAAGGTAGAAATGAGGCACCACGCA
GAGACCATGAAGATCCAGAGAAATGCTCCTGACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no117_k04.g1 MSMg01no117_k04.g1 CHROMAT_FILE:
MSMg01no117_k04.g1 PHD_FILE: MSMg01no117_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:15 2005
         (522 letters)



>mm_chr4_90315878_90316794
          Length = 917

 Score =  886 bits (458), Expect = 0.0
 Identities = 504/522 (96%), Gaps = 5/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttcataagatctgtatcgaagtatctaaattggatgacttaaagaatgtgtattaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttcataagatctgtatcgaagtatctaaattggatgacttaaagaatgtgtattaagt 260

                                                                       
Query: 61  attgccttaaaatagatgattatttcctcttagctgataacatttaatcctttaatctta 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 attgccttaaaatagatgattatttcctcttggctgataacatttaatcctttaatctta 320

                                                                       
Query: 121 tagttcataccttttaattaaatagtataattaatgacctttgctgaaattattttttgt 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttcataccttttaattaaatagtataattaatgacctttgctgaaattattttttgt 380

                                                                       
Query: 181 ctcagtctttcagtaataatagttcttaaaacaccaggtttaccatgagctgagcacttt 240
           |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct: 381 ctcagtctttcagtaataatagtttttaaaatactaggtttaccatgagctgagcacttt 440

                                                                       
Query: 241 gaatgggataattttcttagatggtaggaaaatgtttctttctttttttcacctcttctc 300
           ||||||||||||||||||||||  |||||||||||||     |||||||||| |||||||
Sbjct: 441 gaatgggataattttcttagattctaggaaaatgttt-----tttttttcacttcttctc 495

                                                                       
Query: 301 agcctagaaatatacaagactcactaaacactaacaaataagagggagcacactaattta 360
           ||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 496 agcctagaaatatacaaaactcactaaacactagcaaataaaagggagcacactaattta 555

                                                                       
Query: 361 ggttgtttaatggaggcttgagatttcagaggaatgcaaagttttaagagctatacacaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ggttgtttaatggaggcttgagatttcagaggaatgcaaagttttaagagctatacacaa 615

                                                                       
Query: 421 gccatttgtatgtagaagatagaatttatttacttcccataagccccaagccagctttgt 480
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 616 gccatttgtatgtagaagatagaatgtatttacttcccataagccccaagccaggtttgt 675

                                                     
Query: 481 tattctcaaaaacttccaaactttgtttgctaaagaataagg 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tattctcaaaaacttccaaactttgtttgctaaagaataagg 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 917
Length adjustment: 10
Effective length of query: 512
Effective length of database: 907
Effective search space:   464384
Effective search space used:   464384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)