BAC Information

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BAC

Clone NameMSMg01-118A06
Chromosome4 (Build37)
Map Location 13,399,513 - 13,519,108
singlet/doubletdoublet
Overlap geneLOC100039988
Upstream geneOTTMUSG00000004461
Downstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118A06.T7 (MSMg01no118_a06.b1)MSMg01-118A06.TJ (MSMg01no118_a06.g1)
ACCAG328999AG329000
length697707
length of high quality
(start - end)
505 (63 - 567)294 (73 - 366)
definitionCHROMAT_FILE: MSMg01no118_a06.b1 PHD_FILE: MSMg01no118_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:44 2005CHROMAT_FILE: MSMg01no118_a06.g1 PHD_FILE: MSMg01no118_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:24:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,518,604 - 13,519,108)(13,399,513 - 13,399,806)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTG
TTTCACCTGAAGGGGAGAAAAGCAAATTGGAAGATCTGAATTCTTATGGT
ACGCTAATGATTAACCCTACATTAATCATAAGCACCAATGGCCACCAACA
GAGCTTAATCGTTTTCTATCAGTTGTGTGACTGTGCTGGGCTCTTATGCT
GGGCTTCTTCAAAGTATTTCCTTATAAGGAGGAATATATTAATATAACTA
GATCTCCTGGGTAATCAGAATTTATTGCATAGCTATTAGAAAATGCTCCA
TACAGAAGTTGCTAGAGAGATGCAACCAAAATACCTGTCTTCTTGCTGTG
TTTGTTTCTTAGACAACAAGGCTTTTAGTGTAAAAATAAAGTACAGTTAA
TCTCGAATTCAGTTAAATCCGGACAGTGTAGTCAGGGAATGCAACATAAC
TGGGACTGGAGTGTGGTTGCGAGACCCTGTTCTGCACGTGTCAGGGGTCT
GCATGATTGAAGGGCCAATGGCAGGAGGAACGGCAGGCTGACTAGCAAGC
TGTTTGCACCTGAGGAAATGAAGAGAACATGGTTTAGTTTGAGGTCTACA
CCTACTTTCTTTGTCCAGAAACTATGACTTCAGCCTACTATGGCTGTTTG
GTGCTGAAAAATCCCACTGGCCTGAATTGTAATCCATAGGAAGGAAG
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCAGCCAATAATGAACTCACCGGATCC
GAAGGTAATCACTGCTGTAATCATTAAAATTTACACCGAATTCTATTACC
CTTTCTACAGATAAGTGTCTTGTACTAAGTGGTGTAGAAGAGATGCGTGA
ACTGGTTTGATAACACTAGAAATCTCTCTTATTTGCTTTTTTCTTTTTTT
CATTCATCTTTAACCAAAGAACAAGACCATGCTTTGAGTTAATTGTAGGA
AAATAAATATTTTTATTATAATTTGGGAATTAAATCTGTCTCTTTGTGTA
TGAGGTCATATAATTCCCACATTCTCATTTCTTTACCTCTTACTTTCATA
AGTGCCTCTCAAATGCTGATCCATACACATCCCACACACTATCTCTTTTG
ATACAACAACCCACATAAAGATTATCATTTATCCCCACTTTATAAAGGGA
AGATAAGCAGAGCTGAAAACAGTAGGGGTGCTGTGGTATATCATTCAACC
AGTCAATGATGGGAACATGCTTGGAATTCAGGGAACTTGACACATGCTGC
AATCTCCCTTGGCTTTCATTGTACCTGTATGGTGCCTCTTTGTGCATAAA
TTTTGCGGGGCTGGAAATATCATTAAAGATGGAAATGTCACGTTTATTTT
TACGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_a06.b1 MSMg01no118_a06.b1 CHROMAT_FILE:
MSMg01no118_a06.b1 PHD_FILE: MSMg01no118_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:44 2005
         (505 letters)



>mm_chr4_13518404_13519308
          Length = 905

 Score =  930 bits (481), Expect = 0.0
 Identities = 499/505 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggagaaaagcaaattggaagatctgaattcttatggtacgctaatgattaaccctacat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 705 gggagaaaagcaaattggaagatctgaattcttatggtacgctaatgattaaacctacat 646

                                                                       
Query: 61  taatcataagcaccaatggccaccaacagagcttaatcgttttctatcagttgtgtgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 taatcataagcaccaatggccaccaacagagcttaatcgttttctatcagttgtgtgact 586

                                                                       
Query: 121 gtgctgggctcttatgctgggcttcttcaaagtatttccttataaggaggaatatattaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 gtgctgggctcttatgctgggcttcttcaaagtatttccttataaggaggaatatattaa 526

                                                                       
Query: 181 tataactagatctcctgggtaatcagaatttattgcatagctattagaaaatgctccata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tataactagatctcctgggtaatcagaatttattgcatagctattagaaaatgctccata 466

                                                                       
Query: 241 cagaagttgctagagagatgcaaccaaaatacctgtcttcttgctgtgtttgtttcttag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cagaagttgctagagagatgcaaccaaaatacctgtcttcttgctgtgtttgtttcttag 406

                                                                       
Query: 301 acaacaaggcttttagtgtaaaaataaagtacagttaatctcgaattcagttaaatccgg 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 405 acaacaaggcttttagtgtaaaaataaagtacagttaatttcgaattcagttaaatccgg 346

                                                                       
Query: 361 acagtgtagtcagggaatgcaacataactgggactggagtgtggttgcgagaccctgttc 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 345 acagtgtagtcagggaatgcaatataactgggactggagtgtggttgcgagaccccgttc 286

                                                                       
Query: 421 tgcacgtgtcaggggtctgcatgattgaagggccaatggcaggaggaacggcaggctgac 480
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 285 tgcacgtgtcaggggtctgcatgattgaagggccgatggcaggaggaacggcaggctgac 226

                                    
Query: 481 tagcaagctgtttgcacctgaggaa 505
           ||| |||||||||||||||||||||
Sbjct: 225 tagtaagctgtttgcacctgaggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no118_a06.g1 MSMg01no118_a06.g1 CHROMAT_FILE:
MSMg01no118_a06.g1 PHD_FILE: MSMg01no118_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:44 2005
         (294 letters)



>mm_chr4_13399313_13400006
          Length = 694

 Score =  553 bits (286), Expect = e-162
 Identities = 292/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagccaataatgaactcaccggatccgaaggtaatcactgctgtaatcattaaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ttcagccaataatgaactcaccggatccgaaggtaatcactgctgtaattattaaaattt 260

                                                                       
Query: 61  acaccgaattctattaccctttctacagataagtgtcttgtactaagtggtgtagaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaccgaattctattaccctttctacagataagtgtcttgtactaagtggtgtagaagag 320

                                                                       
Query: 121 atgcgtgaactggtttgataacactagaaatctctcttatttgcttttttctttttttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcgtgaactggtttgataacactagaaatctctcttatttgcttttttctttttttca 380

                                                                       
Query: 181 ttcatctttaaccaaagaacaagaccatgctttgagttaattgtaggaaaataaatattt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatctttagccaaagaacaagaccatgctttgagttaattgtaggaaaataaatattt 440

                                                                 
Query: 241 ttattataatttgggaattaaatctgtctctttgtgtatgaggtcatataattc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattataatttgggaattaaatctgtctctttgtgtatgaggtcatataattc 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)