Query= MSMg01no118_a11.b1 MSMg01no118_a11.b1 CHROMAT_FILE:
MSMg01no118_a11.b1 PHD_FILE: MSMg01no118_a11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:45 2005
(651 letters)
>mm_chr4_12697607_12698656
Length = 1050
Score = 1207 bits (624), Expect = 0.0
Identities = 642/648 (99%), Gaps = 2/648 (0%)
Strand = Plus / Plus
Query: 5 gaattccatctgtttagaaa-aattcttctttcagaagctcacagtatctgctttcctaa 63
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattccatctgtttagaaagaattcttctttcagaagctcacagtatctgctttcctaa 263
Query: 64 tcagacaaaagaaattcttcattacaataaagtgttctctcacactaattcatccagtta 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 264 tcagacaaaagaaattcttcattacaataaagtgttctctcacactaattcatccagtca 323
Query: 124 tcactggcaaggcttgcaaaggtctgtgctgacttgtgactactgtaataacttttaagc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcactggcaaggcttgcaaaggtctgtgctgacttgtgactactgtaataacttttaagc 383
Query: 184 agtttaaaaaaacaaaacaaacaaaacaaaacagcatttaaataatcagtatgtcattta 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtttaaaaaaacaaaacaaacaaaacaaaacagcatttaaataatcagtatgtcattta 443
Query: 244 atttctatgttaccaaaagtatataatttctttccacctgcataactaccacccatgttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atttctatgttaccaaaagtatataatttctttccacctgcataactaccacccatgttc 503
Query: 304 tagtgtgacagtaattgaaagccatcagtcttgttttaaaaaaaaatagcatacctttct 363
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 504 tagtgtgacagtaattgaaagccatcagtcttgttttaaaaaaaa-tagcatacctttct 562
Query: 364 ttaactataaatatttgttttttgggcattgttgtcaaaaatatgaaggctgtagttctg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttaactataaatatttgttttttgggcattgttgtcaaaaatatgaaggctgtagttctg 622
Query: 424 tggacttatatctgagtccactatcctattgatcaacgtgtttgcttttatgcaagtgcc 483
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 623 tggacttatatctgagtccactatcctattgatcaacgtgtttgcttttgtgcaagtgcc 682
Query: 484 gtggtctctctagctggtaatgatacccttcagtccttaaatgcgtatattatttacaca 543
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 683 gtggtctctctagctggtaatgatactcttcagtccttaaatgtgtatattatttacaca 742
Query: 544 tctgataacttcaggagtcatatttgtacttctgtgctgtacagctaataaaattcttgt 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tctgataacttcaggagtcatatttgtacttctgtgctgtacagctaataaaattcttgt 802
Query: 604 cagtgattttagaatcagaaccaaagagactatagttgctactgacac 651
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cagtgattttagaatcagaaccaaagagactatagttgctactgacac 850
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1050
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1040
Effective search space: 666640
Effective search space used: 666640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_a11.g1 MSMg01no118_a11.g1 CHROMAT_FILE:
MSMg01no118_a11.g1 PHD_FILE: MSMg01no118_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:45 2005
(597 letters)
>mm_chr4_12805876_12806872
Length = 997
Score = 592 bits (306), Expect = e-173
Identities = 309/310 (99%)
Strand = Plus / Minus
Query: 1 atgatcaaagaaattatttggagatcactgtacgaattaaacaaaaggaataatcagaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 atgatcaaagaaattatttggagatcactgtacgaattaaacaaaaggaataatcagaga 251
Query: 61 agagtaatgtagtagaaattagccaaatataaggtaaaggcgtttgatggtcctgtaaca 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 agagtaatgtagtagaaattagccaaatataaggtgaaggcgtttgatggtcctgtaaca 191
Query: 121 atgcattcaaggctatttcccatttttctcttctattagatttagtgtatacagttttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 atgcattcaaggctatttcccatttttctcttctattagatttagtgtatacagttttgt 131
Query: 181 gttgaggtccttgatctacttggacttgagttctgtgcaaagtgataaatatagatgaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 gttgaggtccttgatctacttggacttgagttctgtgcaaagtgataaatatagatgaat 71
Query: 241 tagcattcttctacatgcaaacatcctgttaagccagcaccattaattgaagatactttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tagcattcttctacatgcaaacatcctgttaagccagcaccattaattgaagatactttt 11
Query: 301 ttcctttgta 310
||||||||||
Sbjct: 10 ttcctttgta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space: 579369
Effective search space used: 579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
