Query= MSMg01no118_c17.b1 MSMg01no118_c17.b1 CHROMAT_FILE:
MSMg01no118_c17.b1 PHD_FILE: MSMg01no118_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:56 2005
(667 letters)
>mm_chr4_130671069_130672135
Length = 1067
Score = 1205 bits (623), Expect = 0.0
Identities = 653/663 (98%)
Strand = Plus / Plus
Query: 5 gaattctctccagaaatcaaggaaccagggaaaggaagggttgtgaaaagaacacccagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctccagaaatcaaggaaccagggaaaggaagggttgtgaaaagaacacccagg 264
Query: 65 aaactgtccaaggttctgaaacacagcagcaagctacagcagggagctgtccgaggtgct 124
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 aaactgtccgaggttctgaaacacagcagcaagctatggcagggagctgtccgaggtgct 324
Query: 125 aaaaacccagcagcaagctacagcggagtccaggacaagttatgtctccaccctctgttt 184
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaaacccagcagcaagcgacagcagagtccaggacaagttatgtctccaccctctgttt 384
Query: 185 aacccagttccccagtcatctcctcacgactcaatccattggttgtcctgtgctcaccca 244
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcccagttccccagtcatctcctcacgactcaatccattggttgtcctgtgctcaccca 444
Query: 245 actgttggttggaatagaacatatggaaagctgggaaccaccaggattcaacccatttgt 304
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actgttggttggaatagaatatatggaaagctgggaaccaccaggattcaacccatttgt 504
Query: 305 catcgtctgacccaactgccttccataattgttgtttgttgcattttagatgttagagtg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catcgtctgacccaactgccttccataattgttgtttgttgcattttagatgttagagtg 564
Query: 365 taaccatgtaaggtgtgatgcagaactctcacatgtgtctgccatgccctcagatctctc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaccatgtaaggtgtgatgcagaactctcacatgtgtctgccatgccctcagatctctc 624
Query: 425 cctctacgagtctgtactcgaggatgtgggacccagttccttccaccaagcatgggaaat 484
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cctctatgagtctgtactcgaggatgtgggacccagttccttccaccaagcatgggaaat 684
Query: 485 ctacctcctctaccttggctggctgatagatgtaccccaggcaacaagagcaaatgcaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctacctcctctaccttggctggctgatagatgtaccccaggcaacaagagcaaatgcaag 744
Query: 545 catgagacagagactctcgacacccttacatgctttaactctctccatcatgatgaactt 604
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 745 catgagacagagactctcgacacccttaaatgctttaactctctccatcatgatgaactt 804
Query: 605 acagaggtgggaatgatcctaagataatctgatagtggagagttgggagttcccatgaca 664
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acagaggtgggaatgatcccaagataatctgatagtggagagttgggagttcccatgaca 864
Query: 665 act 667
|||
Sbjct: 865 act 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_c17.g1 MSMg01no118_c17.g1 CHROMAT_FILE:
MSMg01no118_c17.g1 PHD_FILE: MSMg01no118_c17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:24:56 2005
(614 letters)
>mm_chr4_130710145_130711158
Length = 1014
Score = 1096 bits (567), Expect = 0.0
Identities = 603/615 (98%), Gaps = 2/615 (0%)
Strand = Plus / Minus
Query: 1 ttcctttctccaatgtgcctccaaggtgtatgctacctccatcaattagtgcccatcaca 60
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 807 ttcctttctccaatgtgcccccaaggtgtatgctacctccatcaattagtggccatcaca 748
Query: 61 gggcttgagtgaaagtaacccttctgttacttaataatggctctttgcgccatagtccca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 747 gggcttgagtgaaagtaacccttctgttacttaataatggctctttgcgccacagtccca 688
Query: 121 ccgctgtactttgcattgctggacagacaccacaaagagcatctctccatggaaaggtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ccgctgtactttgcattgctggacagacaccacaaagagcatctctccatggaaaggtca 628
Query: 181 agaggagggaaaaactccacacaagatcttcagtgtgggagagtgaagacagcccattga 240
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 627 agaggaggggaaaactccacatgagatcttcagtgtgggagagtgaagacagcccattga 568
Query: 241 ataagtattctctggaatattttgatttaactactctgagtagcagtgg-ctttctgcag 299
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 567 ataagtattctctggaatattttgatttaactactctgagtagcagtggtc-ttctgcag 509
Query: 300 accaggatcagtctgggattggcaactatcttagaagaggatttgtttttatattgagaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 accaggatcagtctgggattggcaactatcttagaagaggatttgtttttatattgagaa 449
Query: 360 atctactctatctgcaagttagccaacggaaccaaaaataccctccccatccaaggtcgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 atctactctatctgcaagttagccaacggaaccaaaaataccctccccatccaaggtcgg 389
Query: 420 ccccctccctgtctcgagagagactgctcttgaagaaggtgagattaaaggatccgactg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 388 ccccctccctgtctcgagagagactgctcttgaagaaggtgagattaaaggatccaactg 329
Query: 480 gcttacgtgggaagatcactcctactgtggtttgaaagtcagatgtctcccagaagctca 539
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 328 gcttacgtgggaagatgactcctactgtggtttgaaagtcagatgtctcccagaggctca 269
Query: 540 tgtgtttaaacacctcgaccccttctggtggtaccatttacaaagtcacagaaccaacaa 599
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 268 tgtgtttaaacacctcgaccccttctggtggtaccatttacaaagtcgcagaaccaacaa 209
Query: 600 gatcttttaggggag 614
|||||||||||||||
Sbjct: 208 gatcttttaggggag 194
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
