Query= MSMg01no118_m01.b1 MSMg01no118_m01.b1 CHROMAT_FILE:
MSMg01no118_m01.b1 PHD_FILE: MSMg01no118_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:42 2005
(651 letters)
>mm_chr4_119337285_119338335
Length = 1051
Score = 1193 bits (617), Expect = 0.0
Identities = 641/649 (98%), Gaps = 4/649 (0%)
Strand = Plus / Plus
Query: 5 gaattcattctcggtttatagaaaag-ttatagaaaaactactgagttttatatactggt 63
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattctcggtttatagaaaagtttatagaaaaactactgagttttatatactggt 264
Query: 64 agtgtctaattgctttgctgaaagtgattttcaggtctaagagttttctggtgaggtctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgtctaattgctttgctgaaagtgattttcaggtctaagagttttctggtgaggtctt 324
Query: 124 agggcttttttcagtttaggatcatgtcatcgcaaataggaacaagtgatttctcccttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agggcttttttcagtttaggatcatgtcatcgcaaataggaacaagtgatttctcccttt 384
Query: 184 tcctgcttgaatgcctttggtttctatttctgaccttgttgatctcctcctggcagggca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 tcctgcttgaatgcctttggtttctatttctgaccttgttgatctcctcctggcaggtca 444
Query: 244 ggtactgcagtgaatacgagcagagagactgggcaccatgagaatcccagatcctagagg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtactgcagtgaatacgagcagagagactgggcaccatgagaatcccagatcctagagg 504
Query: 304 aaatgcctgcagagccgcccatttagtatagtacagactattaaatttggcgatgtagcc 363
|||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 505 aaatgcctgcagagccccccatttagtatagtacagactattaaatttgcc-atgtagcc 563
Query: 364 tttacg-atgtggaggtctgctcctatttccagtttctctggggctcttttttcttacca 422
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttta-gtatgtggaggtctgctcctatttccagtttctctggggctcttttttcttacca 622
Query: 423 cactgaacattgtaaaaactcatcaaagctctctcacctcaggtctttgctctttaccca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cactgaacattgtaaaaactcatcaaagctctctcacctcaggtctttgctctttaccca 682
Query: 483 gctctctgctcaagctcaaagatcactccctcagagagatctttcggaccctcccatctt 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 683 gctctctgctcaagctcaaagatcactccctcagagagatctttctgaccctcccatctt 742
Query: 543 gaaagctttctctgaatttgcttgtggcacctgttatctatccatctgtctatctatcta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaaagctttctctgaatttgcttgtggcacctgttatctatccatctgtctatctatcta 802
Query: 603 ttcatccatcatctgtctatctctctttgtagccatccatccatctatc 651
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ttcatccatcatctgtctatctctctttgtagccatccatccatctatc 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_m01.g1 MSMg01no118_m01.g1 CHROMAT_FILE:
MSMg01no118_m01.g1 PHD_FILE: MSMg01no118_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:42 2005
(616 letters)
>mm_chr4_119392093_119393107
Length = 1015
Score = 1038 bits (537), Expect = 0.0
Identities = 602/633 (95%), Gaps = 18/633 (2%)
Strand = Plus / Minus
Query: 1 tcttggtacagacagactgggtagggctccttctactctc-gctcagagggattgtacag 59
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct: 976 tcttggtacagacagactgggtagggctgctcctactctcagctcagagggattgtacag 917
Query: 60 g--------------gagagagag--agagacagagacagagacagagagacagatacaa 103
| ||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct: 916 ggagaaagagagagagagagagagacagagacagagacagagacagagagacagacacaa 857
Query: 104 agacagccacagacagacagacacacagagagaggtagagagaatgctactcagattatc 163
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856 agactgccacagacagacagacacacagagagaggtagagagaatgctactcagattatc 797
Query: 164 acttttcccagggtttagagatgggcatggaacctaagccaggctgatgaagattaattg 223
| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 796 aattttcccaggctttagagatgggcatggaacctaagccaggctgatgaaaattaattg 737
Query: 224 gataaaattctgagaccttggctggagaaccctgggaactaaataattactgaagaagca 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 gataaaattctgagaccttggctggagaaccctgggaactaaataattactgaagaagca 677
Query: 284 aagcccagaaaagaaagaggaaacccagtatgtacacacactgtaggagccctagagaga 343
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 676 aagcccagaaaagaaagaggaaacccagtgtgtacacacactgtaggagccctagataga 617
Query: 344 gctgggcatggcttttgcaatcacataagaaaagaagctccagggtttctgctgttgttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gctgggcatggcttttgcaatcacataagaaaagaagctccagggtttctgctgttgttt 557
Query: 404 gttttgcttaagttgaggttccatctgcaaacaaaccctacctagtatactaaaacgagg 463
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 556 gttttgcttaagttgaggttccatctgcaaacaaaccctaccgagtatactaaagcgagg 497
Query: 464 taaggagaagaagacaagaaaaagattcagtatcaccagagtgtttgttgtgtgctccag 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 taaggagaagaagacaagaaaaagattcagtatcaccagagtgtttgttgtgtgctccag 437
Query: 524 agcaggacacaggcaaatgtaggttgagctatccgattctcaaaataactttgctcggct 583
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 436 agcaggacacaggc-aatgtaggttaagctatccgattctcaaaataactttgctcggct 378
Query: 584 tatgttgaagaactcaccaagcacttcagaata 616
|||||||| ||||||||||||||||||||||||
Sbjct: 377 tatgttgaggaactcaccaagcacttcagaata 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1015
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1005
Effective search space: 609030
Effective search space used: 609030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
