BAC Information

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BAC

Clone NameMSMg01-118P08
Chromosome4 (Build37)
Map Location 92,119,153 - 92,119,374
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
Downstream geneLOC620269, LOC384125, Tusc1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118P08.T7 (MSMg01no118_p08.b1)MSMg01-118P08.TJ (MSMg01no118_p08.g1)
ACCAG329697AG329698
length721713
length of high quality
(start - end)
221 (73 - 293)---
definitionCHROMAT_FILE: MSMg01no118_p08.b1 PHD_FILE: MSMg01no118_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:58 2005CHROMAT_FILE: MSMg01no118_p08.g1 PHD_FILE: MSMg01no118_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGG
AATTCAAGAGATATGGCTGATATTCAGATAATTAGGGAAAAAATTCTCAG
AGTGTGATGTGCATGTAGACATTCCAATGAAAACGCTGCCAGTTCGATAT
CAGTGATTAAGCGAAACCCTGAAAGCTTATTCCAGTTGCTGCTCAGAATG
TGTAATGTTGAATATATCCCATTAACAATCACAATGCAATCAAGATGACA
ATAGAAATTATACTAGGTTTCTTTTTGTTTGTGACTCATTTGAGAAGTGA
GGATGTAGATGAAAACAGAATGTTGTGAGCTTTTGTTGAAGCTCAGAAAT
GAATATTTCATGACTTTTATAGCTAGGCCCAACGCCAAAAAGCTATATCA
GACCCTAGGTAATACAGAACACTTGAACCTATAATAAATTTTCCACTGAA
TAGTCTCCATTCACATACTTACTCTCTCCTATGAGTTGCCTTATACTGCA
TCACATTTCTTTTCGATACTAAAGACTCATACATTAGTTTACCACCTTGA
CGATTTTTCTCCCGGCCTTGTTGATACTCTTCTCACGGCACACTTCATAA
CCCAACCCCATGCCATAATATGCCCCCCCCCTCTTGCAATATATTCCCGA
CTCTTCCACAATTTGTCAGCTTCCCTCTCAGACCCCCTATACCTCCTACT
GCCCGATATACCCCATCCTCC
AATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTACAGTAGTCTCTCCATTTACATGTGA
ACAATCCCAGTGAACATGAAAGCCTATGTTTCCTTGTGTAAGACTGAGTC
TGTGCATTTTTTTCCTGACAGCCTAATTCCAGAATAACAATCATCCACCC
AAACAGCTTTCGGCAACTGTTACACAAAAAATACTTTGAAAAACTATTTT
TAGCTCAACTATTACTCACCCGCACCTGAAGTCTAATGACATTCTTATCA
TACATTACAACATTTGGCCTCTTCATTTAACTAGTATATTTACCTTTTAT
GGACAATGCATAACCTTAAAACAACCTCTGGATCTACAAGCCTCATGATA
GTGTCTTAGCGCTTCTATCGTTCCGACATAATACCTTGACCAATAATCAT
GCTTGGATGAAAGGCTTCAGTTGAATTACACTTCCATAGATTGGTCCACC
ACTGCTAGCAATGTCCGAGGGAAATTCACGCTCCACATGTTCCTGGATAC
AGCACCCGCTACAGAGGCCTTGTATGTTCCGTCGCTATCGCCTTGCTCAT
TCTATCCCACTTTCCAACCTCCATCCACGAATGCCACACCGTTAATCATT
ACATTTTTAGTCCTTCCTATTCTTCCCCTCCTTCCCTATCTTCAACCTTT
CTCTGCCAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_p08.b1 MSMg01no118_p08.b1 CHROMAT_FILE:
MSMg01no118_p08.b1 PHD_FILE: MSMg01no118_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:58 2005
         (221 letters)



>mm_chr4_92118953_92119574
          Length = 622

 Score =  414 bits (214), Expect = e-120
 Identities = 220/222 (99%), Gaps = 1/222 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagataattagggaaaaaattctcagagtgtgatgtgcatgtagacattccaatgaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttcagataattagggaaaaaattctcagagtgtgatgtgcatgtagacattccaatgaaa 363

                                                                       
Query: 61  ac-gctgccagttcgatatcagtgattaagcgaaaccctgaaagcttattccagttgctg 119
           || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 362 acagctgccagttcgatatcagtgatgaagcgaaaccctgaaagcttattccagttgctg 303

                                                                       
Query: 120 ctcagaatgtgtaatgttgaatatatcccattaacaatcacaatgcaatcaagatgacaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctcagaatgtgtaatgttgaatatatcccattaacaatcacaatgcaatcaagatgacaa 243

                                                     
Query: 180 tagaaattatactaggtttctttttgtttgtgactcatttga 221
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tagaaattatactaggtttctttttgtttgtgactcatttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 622
Length adjustment: 9
Effective length of query: 212
Effective length of database: 613
Effective search space:   129956
Effective search space used:   129956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)