BAC Information

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BAC

Clone NameMSMg01-119C20
Chromosome4 (Build37)
Map Location 99,436,356 - 99,436,831
singlet/doubletsinglet
Overlap geneItgb3bp
Upstream geneAnkrd38, LOC100039541, Usp1, Dock7, Angptl3, LOC665193, Atg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6
Downstream geneBC020077, Pgm2, Ror1, Ube2u, LOC277707, LOC621573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119C20.T7 (MSMg01no119_c20.b1)MSMg01-119C20.TJ (MSMg01no119_c20.g1)
ACCAG329862AG329863
length717825
length of high quality
(start - end)
534 (64 - 597)---
definitionCHROMAT_FILE: MSMg01no119_c20.b1 PHD_FILE: MSMg01no119_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:15 2005CHROMAT_FILE: MSMg01no119_c20.g1 PHD_FILE: MSMg01no119_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAATTCGT
TTCTGTTCCCCAGGATGCCAGCAAAAAACAAAACATGATGGACCTCATCC
TGCCCTCAGGAACATGGAGTCCAGCACAGAGGGCGGGTAGCCAGAGTGAA
GTGTGTAAGAATAGTAACTGCATCACACCAGTGCTCTTTGGTATGATGTA
CAAGGCATATAACAAATTTCCTAGCTATTATCATTTTAAGATGTATATTC
TGAAGTAGAGCTTATGAGATGTTGAAATAAAACTTATAATGCCCAAACTT
GTTTAGTATGTAAAATAATTTTTTAAAAAGATTTATCCATTTTTATTTTA
CATGTATTGGTGTTTTTCTCACATATGTAAATGTACTTCATGCGTGCAGT
ACCCACACAGGACACTGAAGAGAGTGTCCAGTCCCTTAGAGCCAGAGTTG
CATATGGTTGTAAGCTGCTGTACGGGTACTGAAAGCCAAGCCTACGTCTT
TTGCAAGAGCAGTATGTAGTCTTAATTGCTGTGCCATCTCTCCAGCCCCC
AACATTATTTTAATTTCACTTGATTTGATATTTACTTTGTATGAGGTAGT
GTAGCAAGTTATTTTGAATTGTTTTCTGAAAAAAAAAAAACTCTTTTTTC
ATATAGATCATCATCTTGACAGCTTTGAATTCCTTAAAGTCATTTTGAAC
TGAGGTAAAGTCTTGCT
NGGGAGACCTGNCGGCCGCCCGTTTCCAAAATATAGGTGACCTATAGAAT
TATCCCAAAAATAATCACNCTNCNNCCTGNNTGCNNNGACTTGTGCCTGC
AATCTCAGCANNANNNACCNCAAANCCNAAAAAACANNNTTTCAAGGCCA
CCCTTAAATTATTTAAATCAAAATTTATTTTATATTATATGAAAAAAGCT
CCGGGGGCTTGAGGGGTTAAAGATTTTCTTTTCATAAAACAACAACCCCT
AATTTTTTAAAATTTTCTTTTTCGGGAGGTGGAGGGTANCTNNNNNNCCC
NCNCCCNNNNNNNNNNCTTTTTCCNCCCNNCCCCNCCCCCCCTTTCCCCC
CCNCCTTTACTTATTTATTTCTTAAAAAAAACCTGGGGGGGGGGTNTTTT
TTTTTTTTTCCCCCCGGGCCCNCNCACCCCCCCCCCCTTCCCTCCCCCCC
TTCCCCCCCTTTTTCCCTTTTTACCTTTTTTTATTTATGCCCTGGGGGGN
NNCNNNCCCCNNCNNCCNNCCANCCCCATCCTCCCCTTCCNCCNNNNTCC
CCCCCCCCNCTTCCCCCTCCCCCTACCCCNCCCCCCCTCCCCCCCNTCCC
CNCTCCCTTTTCCCTTTTTTCCTCCTCCCCCCCCCTTCTTTCCCTCCTTT
TCCTCCCCTCTCCCCCCACTTCTTTTACCCCCCTTTTTCCTCCCTCTTTT
CATTTCTCTTTCCCTCTTTCCCCCCTCTCCCCCCTTCCCCTTCATCCCTT
TTTCCCTTCCCTTCCCCCTTTTTCCCNCCCTTCCCCTTCCCCTTTTATAT
TTTTCCCCTTTTTTTTTTATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_c20.b1 MSMg01no119_c20.b1 CHROMAT_FILE:
MSMg01no119_c20.b1 PHD_FILE: MSMg01no119_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:15 2005
         (534 letters)



>mm_chr4_99436356_99437290
          Length = 935

 Score =  876 bits (453), Expect = 0.0
 Identities = 471/477 (98%), Gaps = 2/477 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgccagcaaaa-aacaaaacatgatggacctcatcctgccctcaggaacatggagtcc 59
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 476 gatgccagcaaaacaacaaaacatgatggacctcatcctgccgtcaggaacatggagtcc 417

                                                                       
Query: 60  agcacagagggcgggtagccagagtgaagtgtgtaagaatagtaactgcatcacaccagt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 agcacagagggcgggtagccagagtgaagtgtgtaagaatagtaactgcatcacaccagt 357

                                                                       
Query: 120 gctctttggtatgatgtacaaggcatataacaaatttcctagctattatcattttaagat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gctctttggtatgatgtacaaggcatataacaaatttcctagctattatcattttaagat 297

                                                                       
Query: 180 gtatattctgaagtagagcttatgagatgttgaaataaaacttataatgcccaaacttgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gtatattctgaagtagagcttatgagatgttgaaataaaacttataatgcccaaacttgt 237

                                                                       
Query: 240 ttagtatgtaaaataattttttaaaaagatttatccatttttattttacatgtattggtg 299
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 236 ttagtatgtaaaataagtttttaaaaagatttatccattttta-tttacatgtattggtg 178

                                                                       
Query: 300 tttttctcacatatgtaaatgtacttcatgcgtgcagtacccacacaggacactgaagag 359
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 177 tttttctcacatatgtaaatgtacttcatgcgtgcagtacccacacaggatactgaagag 118

                                                                       
Query: 360 agtgtccagtcccttagagccagagttgcatatggttgtaagctgctgtacgggtactga 419
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 117 agtgtccagtcccttagagccagagttgcatatggttgtaagctgctgtatgggtactga 58

                                                                    
Query: 420 aagccaagcctacgtcttttgcaagagcagtatgtagtcttaattgctgtgccatct 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  aagccaagcctacgtcttttgcaagagcagtatgtagtcttaattgctgtgccatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space:   484700
Effective search space used:   484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)