BAC Information

Click to search

BAC

Clone NameMSMg01-119D05
Chromosome4 (Build37)
Map Location 133,363,963 - 133,364,167
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr, Ahdc1, LOC100041932, Wasf2, Gpr3, Cd164l2, Fcnc-ps, Map3k6, Sytl1, D4Ertd196e, LOC100041990, LOC100042018, Wdtc1, Slc9a1, 4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a
Downstream geneRps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1, Ldlrap1, Tmem57
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119D05.T7 (MSMg01no119_d05.b1)MSMg01-119D05.TJ (MSMg01no119_d05.g1)
ACCAG329880AG329881
length727706
length of high quality
(start - end)
170 (72 - 241)206 (76 - 281)
definitionCHROMAT_FILE: MSMg01no119_d05.b1 PHD_FILE: MSMg01no119_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:16 2005CHROMAT_FILE: MSMg01no119_d05.g1 PHD_FILE: MSMg01no119_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:26:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGCGGA
ATTCTAACCTTTTCGATCAGTCTGAGGGACCTGCCTAGGTTAATTTTCTC
TGCCAGTTAAAGAATTAAAGGGCAGAAAAGGCCACACTCGGGAGGCAGAG
GCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCC
AGGACAGCCAGCGCTGCACAGAGAATACCTGTCTCGAAACAAACATACAC
ATTTACTAATCTATAATAAAACTGAACACTTCAAGGCAGGATCGGATTAA
CAAAGAAAACAAGAATAATTTTTTTTTTTTTACTCCACTACAGTATGTGT
TCTGGATTTGCAGTTATATCCCCACCCCCCCCACAATCCTAACTCCAATT
CTTCTTGAGGGCTTTTCCATCTTAATCCTTTTTTGACGCTCTGGTTCTGT
GAGGTTCCCCCTTTCCCTTTTTTCTTCCTCTCCTTTTTTTTCCCCCTTTC
ATCCTTCTCCTTTTTCCCCTCTTTTCCCTCCTTTTTTCCTTTTCCCCTCC
TCTTCCTTCCCCTTTTCCTTCTTCCCCTTTCCCCTTTTTCCCTTTTTCTC
CTTCCTTTTCCCCCCTTCTTTCCCCCTTTACCTTCCCTTCTTTTCCCCCT
TTTCTCACCTTTCCCTCTTTTCCCCCCCCTCCTTTTTCTCTTTTTTCTCC
TCCCTCCTTTTCTCCCTCCCCCCCTTC
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTATACAGAGA
AGCCCTGTCTTGGGGGGGGGGGGGCAAACAAAAAACAAAAACAAAAAAAA
ACACTCTAAAATAAAATTGAAATGTAAAATAAAAGGAAGGTTTTTTTCAC
CCTCACATGGACATACATGCAAGCCAAACTCCAACACACATAATAAAAAT
AAATCATTTAAAAAAAAAAAAAAAACAATGGCCTGGTCTACAGAGTGAAT
TCCAGGACAGCCAAATCTATACAAAAAAACCCTGTCTCGAAAAACAAAAC
AAAACAAACAAACAAACAAACAAACAAAAATGGAGTAATAAGCCAATGAG
CTGGCCCATGGGGTCAGGGTGCTTGCTGACAAGCCCGAGTTCAATTCCCA
GGACCCTAAATGCAAAAAAAAGCTTCTTGAAAGCTGTCATCTGCCCTTAC
AAGAATTTTGGGGGTTTTTTTCTGTGTGTGCGTGCGTGTGTGTAATAATA
AAAAAAAGGGAAAACTTTATTGATAAAATAAAGAACAGAGCCTTAGACAA
GGGCCAGAATGTCTGTTAAAAAGTTTAGTAGAAAAAAGCCTTCCCTTCTC
TCTGCATGTAGAAAGTTAGGCCTTTAAAATGGCTAAAAAGGTTTGGCGAT
ATGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_d05.g1 MSMg01no119_d05.g1 CHROMAT_FILE:
MSMg01no119_d05.g1 PHD_FILE: MSMg01no119_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:16 2005
         (206 letters)



>mm_chr4_133363762_133364367
          Length = 606

 Score =  375 bits (194), Expect = e-109
 Identities = 203/206 (98%), Gaps = 1/206 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccagggctatacagagaagccctgtcttgggggggggggggcaaacaaaaaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 202 caggacagccagggctatacagagaagccctgtcttgggggggggggg-caaacaaaaaa 260

                                                                       
Query: 61  caaaaacaaaaaaaaacactctaaaataaaattgaaatgtaaaataaaaggaaggttttt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 caaaaacaaaaaaaaacactctaaaataaaattgagatgtaaaataaaaggaaggttttt 320

                                                                       
Query: 121 ttcaccctcacatggacatacatgcaagccaaactccaacacacataataaaaataaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaccctcacatggacatacatgcaagccaaactccaacacacataataaaaataaatc 380

                                     
Query: 181 atttaaaaaaaaaaaaaaaacaatgg 206
           ||||||||||||||||| ||||||||
Sbjct: 381 atttaaaaaaaaaaaaagaacaatgg 406


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 606
Length adjustment: 8
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)