Query= MSMg01no119_k19.b1 MSMg01no119_k19.b1 CHROMAT_FILE:
MSMg01no119_k19.b1 PHD_FILE: MSMg01no119_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:53 2005
(465 letters)
>mm_chr4_97428358_97429222
Length = 865
Score = 810 bits (419), Expect = 0.0
Identities = 448/461 (97%), Gaps = 8/461 (1%)
Strand = Plus / Plus
Query: 7 tctctctctctctccctctctctctctctctctctctctctctc--atctctgtctctct 64
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 211 tctctctctctctctctctctctctctctctctctctctctctcatatctctgtctctc- 269
Query: 65 ctgtctctgtctctgtctctgtctctctgtctctctctctctcaacactggcctcaaata 124
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ---tctc--tctctgtctctgtctctctgtctctctctctctcaacactggcctcaaatt 324
Query: 125 tttgatctttctggattagtatttaggattacaggcagcagcaccacccctggctttaac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttgatctttctggattagtatttaggattacaggcagcagcaccacccctggctttaac 384
Query: 185 aggagactataaaagtaagtaaagaataagttacaacgttagaatgaaactacctaaatt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 aggagactataaaagtaagtaaagaataagttacaacgttagaatgaaactatctaaatt 444
Query: 245 aaggaaaattccatttaatgaattacatatttttgcaatgtttaatgtgtgtgtgcgtct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 445 aaggaaaattccatttaatgaattacatatttttgcaatgtttaatgtgtgtgtgtgtct 504
Query: 305 gtgtgtgtccgtgtgcgtatacagggataaagatagaggacagatggatagacaaactat 364
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtgtgtgtccgtgtgtgtatacagggataaagatagaggacagatggatagacaaactat 564
Query: 365 agacagaactcagggccttgtttatgcctggagagacatctaccattgagccacaacaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agacagaactcagggccttgtttatgcctggagagacatctaccattgagccacaacaat 624
Query: 425 atttcatttttaatgtaacaaaggaatagtagtctcccatt 465
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atttcatttttaatgtaacaaaggaatagtagtctcccatt 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 80
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_k19.g1 MSMg01no119_k19.g1 CHROMAT_FILE:
MSMg01no119_k19.g1 PHD_FILE: MSMg01no119_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:53 2005
(435 letters)
>mm_chr4_97592583_97593417
Length = 835
Score = 818 bits (423), Expect = 0.0
Identities = 432/435 (99%)
Strand = Plus / Minus
Query: 1 tttgccaatttgtaaaaataggctctattctacttccacgaacattacccacctggcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tttgccaatttgtaaaaataggctctattctacttccacgaacattacccacctggcatt 576
Query: 61 ttatattctaaaatttagaattatctcatgctgcaagcagtgtgaaaaaaaatcttactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttatattctaaaatttagaattatctcatgctgcaagcagtgtgaaaaaaaatcttactt 516
Query: 121 gcttacatactcatggatggatatgtatgaaaagagaaaaattgcatattttatgtgggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gcttacatactcatggatggatatgtatgaaaagagaaaaattgcatattttatgtgggt 456
Query: 181 ttttttgtcactgtcacacaatactattcacccaaatatgaactaaaatatcagctagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttttttgtcactgtcacacaatactattcacccaaatatgaactaaaatatcagctagtg 396
Query: 241 tgtaataaaaacaaaaagaaaaatactctcatttgaatcatcattactaacttgtaagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tgtaataaaaacaaaaagaaaaatactctcatttgaatcatcattactaacttgtaagtt 336
Query: 301 aaaagtgtgcgacttcttgtgatggtctggcctgaactttcaattttaaatttgaaaaca 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaaagtgtgcgatttcttgtgatggtctggcctgaactttcaattttaaatttgaaaaca 276
Query: 361 aaggttttattcggtgcattctaaaagaagtgatagtacaatgcgtacgaattatcacaa 420
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 aaggttttattcggtgcattctaaaagaagtgatagtacaatgtgtaagaattatcacaa 216
Query: 421 aaattgtgtgtgtgt 435
|||||||||||||||
Sbjct: 215 aaattgtgtgtgtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space: 351876
Effective search space used: 351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
