XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAAAGGCGCGGAATT
CAGCATAGCTACCACTATTGGCTTATTCAACATTAACAGAAAGATTACAT
GTACGTGCAGGATGTCAGAGTTCTGTGAGTTGTTGACTCAGTTCAGATAG
CCCTGCTATGTCTTCACAGTCCCCTTTATCTTATGGTCAAGATGTTCCCA
GGAATGTTTTAACTACGAGGCATACCCAGGTTTGTTTTTCTCTTTTCTCA
GCCCCAGGTAGCCTCTAGGCTCACAAACAACCAGCAATTTCTGAGTACTT
TATATGACTTACAGGTCTTGAAATTTCATCTTTCTTTCATGAGTACATAC
TATGCATGTCCTTTTGGGTCTTCATTACCTCACTCGGGATGATATTCTCA
AGTTCCATCCATTTGCCTATAAAATTCATAAAGTCTGTTTTTAATAGTTG
AATAGTATTCCATTGTGTAGTTGTGCCACATTTTCTGTATCCGTTCTTCA
ACTGAGAAGCATCCAAGTTATCTCCAGTTTCTTGCTATGAAGAATAAAGC
CACTATGAATATCACTGAGCAAGTATCACTGTGGTACAGTAGAGCATCTT
TTAGGTATATGCCCAGCAGTGGTATAGCTGAACACCACTTCAGGTAGACC
TATTCCCTTCTGAGAAACTACCAGATTGATTTCCAGAGTGGTTGTACCAG
TTTGTACTCCCACCAGCA

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTAGGCAGTTTCCTCCTACGAATTTAGACA
GAAGGATACACTTAATTGGATGCAACATTACTTTTGTCCCAACGTAATCC
TCCTTAACCAGGAATGTTCTGGGGAAACTAGCTCTTCTGACTCTGACTTT
CTTTTTATCCTGTGTGACATTTGAATTTAAGGGTTTGATGTACTTAAAAA
GTTTGAGCTCAGATGTAGTTACACTTAATAATTTAGTAAGACATGAAGTG
TTAGTGTTCAGCTGATGTTTACAGCTGCCATTGTCAATCCTAGGATTAGG
AGTTTATTTTAACCTTTCGAAATTTCCTTCTCTTTGATTTTTTTTTTTTT
AAGGTAAACTCATTTCCCCCTATAAAAATCACCTGAACTCTCAGTTTCTC
AGGGGCACCATTTGAATGTGCCTATGTCATAAGTGCCACAGTTACTTACT
TTACAACTTTATGTTGCAGAATTAAACAGAGGATATATGGCTTATATATA
TGGCTTTCTTTTCTGTGCTTTCCAACTGCATTCTGTAAGTCTTATCAGTG
ATTATGTAAAATGTGTCTTTCCTTTATAACATAGAGTAAACAGACTGTTG
AAATGTGGTTGCAGCATCCACCCCAAATGTTCTCCCTCTGACGTCCTTTG
TTTTCTCAGTCTGT

Query= MSMg01no119_l20.g1 MSMg01no119_l20.g1 CHROMAT_FILE:
MSMg01no119_l20.g1 PHD_FILE: MSMg01no119_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:58 2005
         (631 letters)



>mm_chr4_49663426_49664458
          Length = 1033

 Score = 1100 bits (569), Expect = 0.0
 Identities = 618/635 (97%), Gaps = 6/635 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaggcagtttcctcctac-gaatttagacagaaggatacacttaattggatgcaacat 59
           |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 cttaggcagtttcctcctacagaatttagacagaaggacacacttaattggatgcaacat 260

                                                                       
Query: 60  tacttttgtcccaacgtaatcctccttaaccaggaatgttctggggaaactagctcttct 119
           |||||||||||||||||||||||||||| ||||| ||||||||  |||||||||||||||
Sbjct: 261 tacttttgtcccaacgtaatcctccttagccagggatgttctgctgaaactagctcttct 320

                                                                       
Query: 120 gactctgacttt-ctttttatcctgtgtgacatttgaatttaagggtttgatgtacttaa 178
           |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactctgacttttctttt-atcctgtgtgacatttgaatttaagggtttgatgtacttaa 379

                                                                       
Query: 179 aaagtttgagctcagatgtagttacacttaataatttagtaagacatgaagtgttagtgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaagtttgagctcagatgtagttacacttaataatttagtaagacatgaagtgttagtgt 439

                                                                       
Query: 239 tcagctgatgtttacagctgccattgtcaatcctaggattaggagtttattttaaccttt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcagctgatgtttacagctgccattgtcaatcctaggattaggagtttattttaaccttt 499

                                                                       
Query: 299 cgaaatttccttctctttgattttttttttttt--aaggtaaactcatttccccctataa 356
           |||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 500 cgaaatttccttctgtttgatttttttttttttttaaggtaaactcatttccccctataa 559

                                                                       
Query: 357 aaatcacctgaactctcagtttctcaggggcaccatttgaatgtgcctatgtcataagtg 416
           |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 560 aaatcatctgaactctcagtttctcaggggcaccacttgaatgtgcctatgtcataagtg 619

                                                                       
Query: 417 ccacagttacttactttacaactttatgttgcagaattaaacagaggatatatggcttat 476
           |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 620 ccacagttacttacgttacaactttatgttgcagaattaaacagaggatgtatggcttat 679

                                                                       
Query: 477 atatatggctttcttttctgtgctttccaactgcattctgtaagtcttatcagtgattat 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atatatggctttcttttctgtgctttccaactgcattctgtaagtcttatcagtgattat 739

                                                                       
Query: 537 gtaaaatgtgtctttcctttataacatagagtaaacagactgttgaaatgtggttgcagc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtaaaatgtgtctttcctttataacatagagtaaacagactgttgaaatgtggttgcagc 799

                                              
Query: 597 atccaccccaaatgttctccctctgacgtcctttg 631
           |||||||| |||||| |||||||||||||||||||
Sbjct: 800 atccaccc-aaatgtcctccctctgacgtcctttg 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1033
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1023
Effective search space:   635283
Effective search space used:   635283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)