BAC Information

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BAC

Clone NameMSMg01-119O13
Chromosome4 (Build37)
Map Location 25,634,054 - 25,634,510
singlet/doubletsinglet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-119O13.T7 (MSMg01no119_o13.b1)MSMg01-119O13.TJ (MSMg01no119_o13.g1)
ACCAG330411AG330412
length715712
length of high quality
(start - end)
460 (46 - 505)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no119_o13.b1 PHD_FILE: MSMg01no119_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:11 2005CHROMAT_FILE: MSMg01no119_o13.g1 PHD_FILE: MSMg01no119_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATGCGCGGA
ATTCATTCTTATCCTTCCCCCTTTTCTTCTCCTTTTCTTATGTTCATGCT
TTTCGGCACTGCAATGTTTCAGAATTGCATTGCATGTTTCTTGTCCTGGT
CAACAGTCAGCTATCACTTCCTGGAGGTTGAGGTAGGTTTTACAGTTGAA
GCTCAGACGTGGAGAGCAACTGTCACCACACAGTGTCATGGCTTCCAGGA
ACATTCCACAAATACAGCTAGTGTTATGACAGATAGCCATAGGTACTCAT
GGCTACACGCCCCTTGCTTTCCTATATCCAAATACTTCTGTATATTACTC
CTTGCTCTTTTTAAAATTGATAGCCTCTTAATTAGTTAGTTGTTCTTACA
TGAATATTTCAAAGCACCCATTTCTTTTTGTGAATAGCTTCTTCTCTTAT
GAAAACTTTGGTCCTTCTACCAGTGGTTCATTTACTCATATAGGTTATGC
TATATACATAACAATGGCTTCAGAGCTGCTTACCTATACTTCATTGAGGG
AAAAATATCCCATATAAGCACAATATATCTGTTATTTCTTACGCACTTAA
TCTTATTCTCTTCCGATTTGATTTGACAAACCACTATCTTTTCCCAACAT
AAAACTGATGCCTTCTCTCTGCTACACTCAATCATATCTTACTTCTTAAT
TATTTACTATAACCT
ATGAACGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGCTATGATCAGTACTCCATTTTCAAT
TGGGTTATTTAGTATGATGATGTCCCGTTTTGTGAGTTCTTCATATATTT
TACATATTAGTCCTGTATCAGATGTGGAGTTGGTAAAAATCTTTCCTCAT
TGTGTAGGCTGCCTTTTTGTACTACTGATGATGTGTTATGCCTTACAAAG
CTTTTTAGTTTCATGAGGTCCCATTTATTAACTGTCTTCCTGCCTATGCT
ATCAGTGCTGTTTACGAAGTTGTCTCTTGCGCCAATGTGTTCAAAGCTAT
TCCCTACTTTTGCTTTTATTGGCTTCAGTGTATTTGTTCTTATGTTGAGG
ACTACGATGCACTTGTACTTCAAATTTGTATAAGGTAATAAGGAAATCTT
TGCTTTCTTCTAAAAGCAACAACACAATTATACTAGCACCATTCGCCGAA
AAGGATTTCCTCTTTTTTTTTTTTAATTGCGTATTTCTGGCTTCTTTATC
AAGCATCAGATTTCCATAGGCGTGTGGATCTATATCTCGATTTTCAATTT
CATTCCACTGCTTAAATGTGTCTGGTTTTACGCCCATAGCACGCTGTTTT
GAGCTATTACACTGTTTGCAATCTAGGATGGCTATACCTCACGGACTTCT
TTTTTTGTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no119_o13.b1 MSMg01no119_o13.b1 CHROMAT_FILE:
MSMg01no119_o13.b1 PHD_FILE: MSMg01no119_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:11 2005
         (460 letters)



>mm_chr4_25633851_25634710
          Length = 860

 Score =  868 bits (449), Expect = 0.0
 Identities = 455/457 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattcattcttatccttcccccttttcttctccttttcttatgttcatgcttttcggca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcattcttatccttcccccttttcttctccttttcttatgttcatgcttttcggca 263

                                                                       
Query: 64  ctgcaatgtttcagaattgcattgcatgtttcttgtcctggtcaacagtcagctatcact 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgcaatgtttcagaattgcattgcatgtttcttgtcctggtcaacagtcagctatcact 323

                                                                       
Query: 124 tcctggaggttgaggtaggttttacagttgaagctcagacgtggagagcaactgtcacca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcctggaggttgaggtaggttttacagttgaagctcagacgtggagagcaactgtcacca 383

                                                                       
Query: 184 cacagtgtcatggcttccaggaacattccacaaatacagctagtgttatgacagatagcc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacagtgtcatggcttccaggaacattccacaaatacagctagtgttatgacagatagcc 443

                                                                       
Query: 244 ataggtactcatggctacacgccccttgctttcctatatccaaatacttctgtatattac 303
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 ataggtactcatggctacacgccccttgctttcctatacccaaatacttctgtatattac 503

                                                                       
Query: 304 tccttgctctttttaaaattgatagcctcttaattagttagttgttcttacatgaatatt 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 tccttgctctttttaaaattgatagcctcttaattagttagttgttcttacatgcatatt 563

                                                                       
Query: 364 tcaaagcacccatttctttttgtgaatagcttcttctcttatgaaaactttggtccttct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcaaagcacccatttctttttgtgaatagcttcttctcttatgaaaactttggtccttct 623

                                                
Query: 424 accagtggttcatttactcatataggttatgctatat 460
           |||||||||||||||||||||||||||||||||||||
Sbjct: 624 accagtggttcatttactcatataggttatgctatat 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)