Query= MSMg01no120_a12.b1 MSMg01no120_a12.b1 CHROMAT_FILE:
MSMg01no120_a12.b1 PHD_FILE: MSMg01no120_a12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:21 2005
(429 letters)
>mm_chr4_62598568_62599393
Length = 826
Score = 799 bits (413), Expect = 0.0
Identities = 424/429 (98%), Gaps = 3/429 (0%)
Strand = Plus / Minus
Query: 1 accaacagcgttgggtgttaaacagaagaacatggtcaccgccaaatcagagtcaaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 accaacagcgttgggtgttaaacagaagaacatggtcaccgccaaatcagagtcaaattt 567
Query: 61 gacaagtctccctttttcttgctagtaccttcttttgtccaaacacgccagagagccagc 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 566 gacaagtctccctttttcttgctagtaccttcttttgtccaaacacaccagagagccagc 507
Query: 121 gagccactgagccagcagaaggtccattcatatcttcagtccccttggtcacactctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gagccactgagccagcagaaggtccattcatatcttcagtccccttggtcacactctccc 447
Query: 181 ttttgaactggacatttgtatgtccaacaaagaacataacaagggaaagccacagtagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 446 ttttgaactggacatttgtatgtccaacaaagaacataacaagggaaagccacagcagaa 387
Query: 241 ccaagagatctggccctagaggatctgaaagcacattttgcagaggtaggaggggtttcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccaagagatctggccctagaggatctgaaagcacattttgcagaggtaggaggggtttcc 327
Query: 301 tggctctaaagaaggttttttttaattcttcttgaaactctgatgaacacatatctagct 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 326 tggctctaaagaaggttttttttaa---ttcttgaaactctgatgaacacatatctagct 270
Query: 361 atttgaacattattaattctctgacatcttctttcatgggaaactgatccttacttcttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 atttgaacattattaattctctgacatcttctttcatgggaaactgatccttacttcttt 210
Query: 421 aaaaaaaga 429
|||||||||
Sbjct: 209 aaaaaaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 826
Length adjustment: 9
Effective length of query: 420
Effective length of database: 817
Effective search space: 343140
Effective search space used: 343140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_a12.g1 MSMg01no120_a12.g1 CHROMAT_FILE:
MSMg01no120_a12.g1 PHD_FILE: MSMg01no120_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:21 2005
(417 letters)
>mm_chr4_62485075_62485891
Length = 817
Score = 799 bits (413), Expect = 0.0
Identities = 416/417 (99%)
Strand = Plus / Plus
Query: 1 agaagagggcatcagatcctctgcagctagacttataggtgactgtaaacccccaacatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagagggcatcagatcctctgcagctagacttataggtgactgtaaacccccaacatg 260
Query: 61 gttttggagaaatgaactcaagtcctctgaaagagcaatgcatgctcttaactatggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttggagaaatgaactcaagtcctctgaaagagcaatgcatgctcttaactatggatt 320
Query: 121 catctcttcaccttccttctgtttcctaatttcattttccattctcccaatgaactgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 catctcttcaccttccttctgtttcctaatttcattttccattctcccaattaactgaag 380
Query: 181 aggcaagttttttccccattttacagatatgggaactgaggcacagaaaggataaggtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcaagttttttccccattttacagatatgggaactgaggcacagaaaggataaggtac 440
Query: 241 ttgcccagggtggtattgctactaaaggatgagacagagcaactatgcctttgtgtcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcccagggtggtattgctactaaaggatgagacagagcaactatgcctttgtgtcatt 500
Query: 301 ttaccttctaaatgctacttgagtctgacacatcaggcacagagtaggtcctctgcgagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaccttctaaatgctacttgagtctgacacatcaggcacagagtaggtcctctgcgagg 560
Query: 361 ctttctgaagccaagtctctttcagagacagagcccagtttcagccctgtgggacct 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttctgaagccaagtctctttcagagacagagcccagtttcagccctgtgggacct 617
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space: 329664
Effective search space used: 329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
