BAC Information

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BAC

Clone NameMSMg01-120B18
Chromosome4 (Build37)
Map Location 86,249,192 - 86,249,316
singlet/doubletsinglet
Overlap gene6230416J20Rik
Upstream geneA930009N24, LOC668052, Adamtsl1, 4930500O09Rik, Rraga
Downstream geneLOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120B18.T7 (MSMg01no120_b18.b1)MSMg01-120B18.TJ (MSMg01no120_b18.g1)
ACCAG330559AG330560
length828784
length of high quality
(start - end)
162 (68 - 229)142 (99 - 240)
definitionCHROMAT_FILE: MSMg01no120_b18.b1 PHD_FILE: MSMg01no120_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:27 2005CHROMAT_FILE: MSMg01no120_b18.g1 PHD_FILE: MSMg01no120_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:27:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGGCTTACATCGGGGCGCTCCTTAGAATCCCGACGCCGAAGCGAGA
GTCCTCCAGCTCTCCTGGCGCTAGTTGTAACCTTTCTGTTTGTTCTGCGG
TGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTT
TGTTTTGTTTTGTTGCGGTTGCCTGTGACAACAGACTACAGCTTCTTTAT
TTTAAGATTTCAGACAATGAAAAAGTAACTTATAATACTTATAAAATAAT
GAAATAAAAATATTTTTTTTTTATAATTAATCTTTTCCTTTACTATACTA
TGATTTTTCAACCCACTTATCCCGTCTACATCAAACACTAGACCTCCACT
ATTTGCTCTCGCTCTTTTATCTTTATCTTATTTCATTATCTCAAATAATT
TTCTTCTTTGAATTACACATCTTTCTATTTTTATTCCAATACTCCACACA
ACAACACTTTATTTCTTTTCCTACAACTATAACTTTACATCATCATATAA
ATTATTCAAATTCTCTTTATATCCCTAAATTATTTTTTAATTAACTCTTA
ACAAATCTTTTTAATTAACTAATCCCAGAACCTCTTCATATTTCTATATC
CCCATTATTTACTTCCTCACAATTAATTTAAACCACACACTTTAACCCCC
CCACCACAATTATAATAAAATACATTAACAAATCTTACTTCCTCATTCCC
TATAAACATTATTTTTCTTACCTCTTCTATATTTCCATTTCTATTATTAT
CACACCATAGTTTATTATTGTCATTCCG
CAAATAAAAAAAAAAGGGACATCTATACTCCTCCTCCTCGCCTACAATAN
ATNCCGATGAAGTGGTAGCCTGGTGGCGCCTGTTCTCAACTTGAGGTGAA
CTATAGAATTTCCGCGGAATTCGATGTCTTCTAAACATTGGAAATCTCAG
CTGTATGCTGGGTAAATAAATTAGGCTATTTGTTAGGTATAATAAAAAGC
AGTTCTAAAAAGAAAGTTCTGTGAGCTGATACCCAATGATGCAAAACCAG
GACTAAAGTTTCATTTATGAGTTTTCTTCATTTTTTTGTTTGGTTTGAGC
AGTGTTTGAGACAGTTTCACTATGAGTCCAAGCTAGCCTGAAACTTACAC
TGTATCCTAGGCTGACCTCATACTAGCGATCTTCCTGACTCAGCCTCCCA
AATGTTACAATTAAAAGCATGTTTCACAACATCAGACATGGTCTCCTATG
ACCAGACCCATGAATGAGGGCGAAACTCTCTATGGAATAAACCTGGTTCT
CAACTTTATCCGTCTGCCTACGTCTTCTAAGACTGAAGGCACAGATCTCG
TATACAATTTCCCAACCTATTTATCCACCCCCACGGCGAGTATAATTTAG
CATAAGGACAAACAGGGATACCCCCCAAATATATTATTTTCCGTATTCAA
TCCCCTTCACTACCGCCCGTTTTCAAAGATAAAAAAAAACCCCGGTGAGA
TAAGTCTGCCCATTACCCGCTTTCGTAAAGGCGCGAAAGCAAATAACAAG
GGTAATACAACCCCCGACCATAATATATTATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_b18.g1 MSMg01no120_b18.g1 CHROMAT_FILE:
MSMg01no120_b18.g1 PHD_FILE: MSMg01no120_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:27 2005
         (142 letters)



>mm_chr4_86248974_86249516
          Length = 543

 Score =  226 bits (117), Expect = 4e-64
 Identities = 123/125 (98%), Gaps = 1/125 (0%)
 Strand = Plus / Plus

                                                                       
Query: 19  gaattc-gatgtcttctaaacattggaaatctcagctgtatgctgggtaaataaattagg 77
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaattcagatgtcttctaaacattggaaatctcagctgtatgctgggtaaataaattagg 278

                                                                       
Query: 78  ctatttgttaggtataataaaaagcagttctaaaaagaaagttctgtgagctgataccca 137
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtatttgttaggtataataaaaagcagttctaaaaagaaagttctgtgagctgataccca 338

                
Query: 138 atgat 142
           |||||
Sbjct: 339 atgat 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 543
Length adjustment: 8
Effective length of query: 134
Effective length of database: 535
Effective search space:    71690
Effective search space used:    71690
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)