Query= MSMg01no120_k06.b1 MSMg01no120_k06.b1 CHROMAT_FILE:
MSMg01no120_k06.b1 PHD_FILE: MSMg01no120_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:09 2005
(467 letters)
>mm_chr4_33732879_33733745
Length = 867
Score = 880 bits (455), Expect = 0.0
Identities = 464/467 (99%), Gaps = 2/467 (0%)
Strand = Plus / Plus
Query: 3 ggaattctttcttttc-tccacttttt-acatgggttctgggtactgaactcaggtttcc 60
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattctttcttttcttccactttttaacatgggttctgggtactgaactcaggtttcc 260
Query: 61 aggcttgtacagtgagtgcctttagctctctctctggacctagataattggtgggagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcttgtacagtgagtgcctttagctctctctctggacctagataattggtgggagctg 320
Query: 121 agctattccatcagaacaacagaaggaagagatatttgtacaagctgatttagatcttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctattccatcagaacaacagaaggaagagatatttgtacaagctgatttagatcttga 380
Query: 181 caccactggcattcgggagtgtatttgttctgcttctcgtatccctgccctctacctacg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccactggcattcgggagtgtatttgttctgcttctcgtatccctgccctctacctacg 440
Query: 241 atgtgatccttaaatgtctatagacatagccagacatcagctgaaggtcaaaatatccct 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 atgtgatccttaaatgtctatagacatagccagacatcagctgaaggtcaaactatccct 500
Query: 301 tgcctgagagtcgtcaatccatatatttacactagaaaggagggctcttcagtgattgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcctgagagtcgtcaatccatatatttacactagaaaggagggctcttcagtgattgct 560
Query: 361 tttattctgtcagttgacaataagataacataatcaaatgggagtttgggggtaaggagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttattctgtcagttgacaataagataacataatcaaatgggagtttgggggtaaggagt 620
Query: 421 aagaattttgaagaaagagaaggccgtactggtctctgagtcagaag 467
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagaattttgaagaaagagaaggccgtactggtctctgagtcagaag 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_k06.g1 MSMg01no120_k06.g1 CHROMAT_FILE:
MSMg01no120_k06.g1 PHD_FILE: MSMg01no120_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:09 2005
(375 letters)
>mm_chr4_33848077_33848851
Length = 775
Score = 574 bits (297), Expect = e-168
Identities = 336/349 (96%), Gaps = 3/349 (0%)
Strand = Plus / Minus
Query: 1 ttgactt-atgaagtccaattgtttttaaatttcattctttgagcaatcacatcttgttc 59
||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 347 ttgacttaatgaagtccaattgtttttaagtttcattctttgagcaatcacatcgtgttc 288
Query: 60 agttgtaagattaaaaattcatttgaatttctgcaggtcagtgagatatgcagtactaac 119
||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 287 agtcataagattaaaaattcatttgaatttctgcaggtcagtgagatatg-aaaactaac 229
Query: 120 cccttacatgatcacatctgaggttacagacgtttaaggtttgcttcaaaatactccagg 179
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 228 cccttacatgatcacatctgaggttacagacgtcaaaggtttgcttcaaaatactccagg 169
Query: 180 ttagaagataaggttgggcaaaagtttagacagttataaattagcagaaacaaccatgag 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ttggaagataaggttgggcaaaagtttagacagttataaattagcagaaacaaccatgag 109
Query: 240 tttgtacttttgaagacaggaggataagtgcactgagtttgttatgttattctattgttt 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tttgtacttttgaagacaggaggataagtgcactgagtttgttatgttattctattgttg 49
Query: 300 tatgtatttgaaaattttaataaaaagatttggtttttttaaagaagag 348
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 48 tatgtatttgaaaattttaataaaaagatttgg-ttttttaaagaagag 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space: 280356
Effective search space used: 280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
