BAC Information

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BAC

Clone NameMSMg01-120L09
Chromosome4 (Build37)
Map Location 110,561,456 - 110,561,838
singlet/doubletsinglet
Overlap genenone
Upstream geneFaf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120L09.T7 (MSMg01no120_l09.b1)MSMg01-120L09.TJ (MSMg01no120_l09.g1)
ACCAG331010AG331011
length728720
length of high quality
(start - end)
383 (69 - 451)243 (73 - 315)
definitionCHROMAT_FILE: MSMg01no120_l09.b1 PHD_FILE: MSMg01no120_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:15 2005CHROMAT_FILE: MSMg01no120_l09.g1 PHD_FILE: MSMg01no120_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATTTTCGCACACAGACTAGCAACAGTACAAATTGCTAGCTGA
ATAAATGCATGAACGAATGACTTCATAACTCAGTAACTCTCATCATGAGC
TTCTGTATATTTGAAACATCATACCGCATTATCAAGTCAAGAGACTCAGA
GCAAGGCAAATCAACAATGCAAAAGATGCCAAAGTGGATTTTTCTCTATC
AATATTAATCATGAGAGAATAAGTTCTTAAACCATTCTCTAGACCCAATT
AAAAAATAAAGTATAAACTGCAGAGTTGCATTAACAATAGCAGTTTCATC
TTACCTCTTAGCTCATGCTCACTACATTGAATAAAGCCTAGTACTCAGCA
CTCTGACATTCTGAGTCATTCCTTGACAAAACCTTACACAACTGCCAATA
GCATCACCTACATCTTTGTGCACAGGACCCCTTGAGCTGAACTATTATAA
GGAGAAAGAATTAATCTATTTCTGCAACCCCTTTCTCTCCTCTTGTTAAT
AAAGGTTGTCTTGGACAACCAATATGTTTCTGTTTTAAAGAAAAATTAAA
AAGGGGTCTAATTTTATTTTCCCTTAAAAACCAAATTGAGTTTTCTTAAA
AAAAACAAACATCTGGGTAAAAATTGGGTCCTCACTTTTTAATAAAAAAA
ATGGGTGTCTCATCCCTGAAATCTAACN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGCTAAACAAAATTCCTTCTTTATGTCCTCTACCATCAT
CATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGT
GTCTGGACTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGT
CCTGGTTTCTGTTAGTAGGATTCTTATGTTTACCTTTCGCCATCTGGCAT
TCTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTG
TTGATTTTGTTACTCACTAACTTTGGCGAGGGAGACAAGCTCTCTCCTCT
GAGTTTTTTCGGTCACACCCCTCTCTGCAAGCAAGCTCTCCTCTTTCCGG
GAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGGCTGAAGATGAA
GGCCGAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGG
TGGCCGGTTGTCTAGAGTCGAATATGGCGCCGCCTCAAAAGCTCTTGTGG
CTCTCGCCAAGAATGTGGCCGGCCGTCTGGAGCCGAATATGGCGCCCCCT
CAAAAGCTCTGTGGCTCTCGCCAGGAAGGCGGCCGGCTGCTCTGGAGACT
ATTATTGTTTTCGCCCCAGAATCTTCTGCGACTCTCCGCCCGTACCCAAT
ACGGTTGGTCCTCTTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_l09.b1 MSMg01no120_l09.b1 CHROMAT_FILE:
MSMg01no120_l09.b1 PHD_FILE: MSMg01no120_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:15 2005
         (383 letters)



>mm_chr4_110561256_110562038
          Length = 783

 Score =  717 bits (371), Expect = 0.0
 Identities = 380/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagactagcaacagtacaaattgctagctgaataaatgcatgaacgaatgacttcataa 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 583 acagactagcaacagtacaaattgctagctgaataaatgcatgaacaaatgacttcataa 524

                                                                       
Query: 61  ctcagtaactctcatcatgagcttctgtatatttgaaacatcataccgcattatcaagtc 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 523 ctcagtaactctcatcatgagcttctgtatatttgaaacatcatactgcattatcaagtc 464

                                                                       
Query: 121 aagagactcagagcaaggcaaatcaacaatgcaaaagatgccaaagtggatttttctcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 aagagactcagagcaaggcaaatcaacaatgcaaaagatgccaaagtggatttttctcta 404

                                                                       
Query: 181 tcaatattaatcatgagagaataagttcttaaaccattctctagacccaattaaaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tcaatattaatcatgagagaataagttcttaaaccattctctagacccaattaaaaaata 344

                                                                       
Query: 241 aagtataaactgcagagttgcattaacaatagcagtttcatcttacctcttagctcatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 aagtataaactgcagagttgcattaacaatagcagtttcatcttacctcttagctcatgc 284

                                                                       
Query: 301 tcactacattgaataaagcctagtactcagcactctgacattctgagtcattccttgaca 360
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 283 tcactacattgaataaagcctagtacccagcactctgacattctgagtcattccttgaca 224

                                  
Query: 361 aaaccttacacaactgccaatag 383
           |||||||||||||||||||||||
Sbjct: 223 aaaccttacacaactgccaatag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)