Query= MSMg01no120_m12.b1 MSMg01no120_m12.b1 CHROMAT_FILE:
MSMg01no120_m12.b1 PHD_FILE: MSMg01no120_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:20 2005
(655 letters)
>mm_chr4_18648573_18649627
Length = 1055
Score = 1197 bits (619), Expect = 0.0
Identities = 643/651 (98%)
Strand = Plus / Plus
Query: 5 gaattccacatgtatcatacactgtttaactatgttaagtcatactttctacactgttct 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacatgcatgatacactgtttaactatgttaagtcatactttctacactgttct 264
Query: 65 aaatataatttattccttagcattgtgtaaattgtattatatgcaagaagaaaaggtgaa 124
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 aaatataatttattccttagcattgtgtaaattgtattatatgcaagaaggaaaggtgaa 324
Query: 125 ccacgttaatgaaaatctttaataatataaaacttgtttcatctattgtatacaaaagta 184
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccacattaatggaaatctttaataatataaaacttgtttcatctattgtatacaaaagta 384
Query: 185 atataaaagaaatctacggatttgtgacttttgttatgcaattaaattgttacataatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atataaaagaaatctacggatttgtgacttttgttatgcaattaaattgttacataatat 444
Query: 245 ttaccttggttaaaacgttaaaaatgtaaatatattactttcaatactacattaagagac 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttaccttggttaaaacgttaaaaatgtaaatatattactttcaatactacattaagagag 504
Query: 305 tacaaaattgaaaagatgtttttcttatatataaatgtatgattgttgactgtcatgtta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacaaaattgaaaagatgtttttcttatatataaatgtatgattgttgactgtcatgtta 564
Query: 365 tttaaaagttgtaagagagctgtgaatcataacataatagttatttaatgtttttttcta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttaaaagttgtaagagagctgtgaatcataacataatagttatttaatgtttttttcta 624
Query: 425 aagagaaatgcttattactagtgatgatctttaaaataatggttagtccttactaagtcc 484
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 625 aagagaaatgcttattactagtgatgatctttaaaataatggttagtccttaataagtcc 684
Query: 485 ctaaatttggtcaattaacctttaaattatagagtaaatgatatccctgttttataaatg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ctaaatttggtcaattaacctttaaattatagagtaaatgatatccctgttttataaatg 744
Query: 545 tgacaaaacaatgtttagagtatttgttgttcacagaaaagaaagtagaactgtatattc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgacaaaacaatgtttagagtatttgttgttcacagaaaagaaagtagaactgtatattc 804
Query: 605 catctagttctatttcaaggtgacgagcataatcactatggtgtgctgtgt 655
||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 catctagttttatttcaaggtgacgagcataatcactatggtgtgctgtgt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no120_m12.g1 MSMg01no120_m12.g1 CHROMAT_FILE:
MSMg01no120_m12.g1 PHD_FILE: MSMg01no120_m12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:20 2005
(624 letters)
>mm_chr4_18762271_18763293
Length = 1023
Score = 1160 bits (600), Expect = 0.0
Identities = 618/624 (99%), Gaps = 1/624 (0%)
Strand = Plus / Minus
Query: 1 ccctgtactggggcatatgatcttcacaagaccaagggcctctcctaccattgatggcca 60
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 930 ccctgtactggggcatatgatcttcacaagaccaagggcctatcctaccactgatggcca 871
Query: 61 actaggccatcctctgctacatatgcaactagagacacagagtctctttaaagaagatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 actaggccatcctctgctacatatgcaactagagacacagagtctctttaaagaagatcc 811
Query: 121 tgaaatacagactaaagaattaagccatatgtcaggtttagtttatcattttataccaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tgaaatacagactaaagaattaagccatatgtcaggtttagtttatcattttataccaat 751
Query: 181 taattggtgaatctgagattagttattgcataaaagctttcagtggcactaaaatttata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 taattggtgaatctgagattagttattgcataaaagctttcagtggcactaaaatttata 691
Query: 241 cactcaaaatctatttatgaatacattttttaatcatataaacaaatatatgaaagcaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 cactcaaaatctatttatgaatacattttttaatcatataaacaaatatatgaaagcaaa 631
Query: 301 tacataaatacatcagaatcctactgaagttgtaactacattgaaataaatatagtgtcc 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 630 tacataaatacatcagaatcctactgaagttgtaactacattgaaataaatatagtgt-c 572
Query: 361 caaataagtccctagaatattttgttttctaggggacagttactttctgaattaatacta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caaataagtccctagaatattttgttttctaggggacagttactttctgaattaatacta 512
Query: 421 cactggaaaatatgaccaaaggtttgttccctccaaaatgaaaaggcatatggtacccat 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 511 cactggaaaatatgaccaaaggcttgttccctccaaaatgaaaaggcatatggtacccat 452
Query: 481 cttagatttgcaaatggaaaaaaagaagtgtagtgtttttgtcactgatgccagatgctt 540
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cttagatatgcaaatggaaaaaaagaagtgtagtgtttttgtcactgatgccagatgctt 392
Query: 541 agggtagcttgttgggtgagcatgatacccctcttctcaatgtgccattgaggctgatat 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agggtagcttgttgggtgagcctgatacccctcttctcaatgtgccattgaggctgatat 332
Query: 601 gtgctgggaactcataaaagtgta 624
||||||||||||||||||||||||
Sbjct: 331 gtgctgggaactcataaaagtgta 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1023
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1013
Effective search space: 621982
Effective search space used: 621982
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
