NCCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATGCG
CGGAATTCTTTGTTTATCCCTGTACCCCATTTTTAATGGGGTTATTTGAA
TTTCTGGAGTCCAGCTTCTTGAGATCTTTGTATATATTGGATATTACTCC
CCTATCAGATTTAGGATTGGTAAAGATCCTTTCCCAACCTGTTGGTGGCC
TTTTTGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTT
ATGAGGTCCCATTTATCAATTCTTGATCTTACAGCACAAGCCATTGCTGT
TCTGTTTAGGAATTTTTCCCCTGTGTTCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATTAATTTCATTGTCTCTGGTCTTATGTGGAGGTTTTTG
GTCCACTTAGACTTGACCTTAGTACAAGGAGATAGAAATAGATCAATTCT
CATTCTTCAACATGATAACTGCCTGTTGTTCCAGCACCATTTGTTGAAAA
TGCTGTCTTTTTTCCACTGAATGGTTTTAGCTCCCTTGTCAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTCTGGGTCTTCAATTCTATTCCATTGAT
CTACCTGTCTGTCACTGTACCAGTACCATGCCATTTTTTTTAAAATCACA
ATTGCTCTGTAGTACAGCTTAATGTCAGGCATGGTGATTCCACCAGAGGT
TCT

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAAAAGTCTTACCAAGGAAAACTA
GAGATAGAAAAGTAAGGATCGACAGGTACTTTATACACAGGGAAAGATTG
AAAGACCCAAGAGTCAAGGTAGCATCAAAGAAGACTATGTCGTACCCAAA
AGAAAAGCATTTCTTGGTTTTGTAGGCCAGCAAGCAAGCCGTGCCCCTTT
AAGACATTTTTTTTTAAAAAGCTTCATGGAGGGAGTGGTGTCTAGTCATT
AGGAAAAGGACATAGAGCCAGATTTTTGACTTTTTATTCTTGGCTGTGCC
ACATGATCTCATTGTAGTTCTGGCAAACCTCCCCTCTCAACATCTTGAGC
TCTCACTTGACACATCTGTAAAATGTATAGAGGTACTGGAGTAGACAAAG
GCTGGATGACATCAAATTACAAGCAGGAACCATGATTCCAGTGGAGAATG
GTAAAGGCACCAATAAACCTCATACACTGATGAAGAACCCAGGGTGCCTC
CCATTGATAAGTGTTTGAAAACCAGAAGAGCGAATCAAAGGCCAAGAAGT
ACATACTGTCTCACAAATGGATAGCTCTGTATAAACAGTCCAGAGAGGGC
TAGGCACAATATAAAACCAGTCTTTAAAGCTGGGAAGATAGCTCTATGGG
CAAAG

Query= MSMg01no120_o01.g1 MSMg01no120_o01.g1 CHROMAT_FILE:
MSMg01no120_o01.g1 PHD_FILE: MSMg01no120_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:28 2005
         (606 letters)



>mm_chr4_10536881_10537895
          Length = 1015

 Score = 1069 bits (553), Expect = 0.0
 Identities = 596/615 (96%), Gaps = 9/615 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaagtcttaccaaggaaaactagagatagaaaagtaaggatcgacaggtactttata 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 201 agaaaagtcttaccaaggaaaactagagatagaaaagtaaggattgacagggactttata 260

                                                                       
Query: 61  cacagggaaagattgaaagacccaagagtcaaggtagcatcaaagaagactatgtcgtac 120
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 cacagggaaagattgaaagatccaagagtcaaggtagcatcaaataagactatgtcgtac 320

                                                                       
Query: 121 ccaaaagaaaagcatttcttggttttgtaggccagcaagcaagccgtgcccctttaagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaaagaaaagcatttcttggttttgtaggccagcaagcaagccgtgcccctttaagac 380

                                                                       
Query: 181 atttttttttaaaaa-----gcttcatggagggag----tggtgtctagtcattaggaaa 231
           ||||||||| |||||     |||||||||||||||    |||||||||||||||||||||
Sbjct: 381 attttttttaaaaaaaaaaagcttcatggagggagggagtggtgtctagtcattaggaaa 440

                                                                       
Query: 232 aggacatagagccagatttttgactttttattcttggctgtgccacatgatctcattgta 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacatagagccagatttttgactttttattcttggctgtgccacatgatctcattgta 500

                                                                       
Query: 292 gttctggcaaacctcccctctcaacatcttgagctctcacttgacacatctgtaaaatgt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttctggcaaacctcccctctcaacatcttgagctctcacttgacacatctgtaaaatgt 560

                                                                       
Query: 352 atagaggtactggagtagacaaaggctggatgacatcaaattacaagcaggaaccatgat 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atagaggtactggagtagacaaaggctggatgacatcaaattacaagcaggaaccatgat 620

                                                                       
Query: 412 tccagtggagaatggtaaaggcaccaataaacctcatacactgatgaagaacccagggtg 471
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 621 tccagtggagaatggtaaaggcaccaataaacctcatatgctgatgaagaacccagggtg 680

                                                                       
Query: 472 cctcccattgataagtgtttgaaaaccagaagagcgaatcaaaggccaagaagtacatac 531
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 681 cctcccattgataagtgttcgaaaaccagaagagtgaatcaaaggccaagaagtacatac 740

                                                                       
Query: 532 tgtctcacaaatggatagctctgtataaacagtccagagagggctaggcacaatataaaa 591
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcctcacaaatggatagctctgtataaacagtccagagagggctaggcacaatataaaa 800

                          
Query: 592 ccagtctttaaagct 606
           |||||||||||||||
Sbjct: 801 ccagtctttaaagct 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1015
Length adjustment: 10
Effective length of query: 596
Effective length of database: 1005
Effective search space:   598980
Effective search space used:   598980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)