BAC Information

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BAC

Clone NameMSMg01-120O10
Chromosome4 (Build37)
Map Location 123,354,749 - 123,355,321
singlet/doubletsinglet
Overlap geneMacf1
Upstream gene9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a, Heyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, D830031N03Rik
Downstream geneLOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc, 1700057H15Rik, LOC100039332, Pou3f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120O10.T7 (MSMg01no120_o10.b1)MSMg01-120O10.TJ (MSMg01no120_o10.g1)
ACCAG331151AG331152
length699707
length of high quality
(start - end)
557 (36 - 592)576 (73 - 648)
definitionCHROMAT_FILE: MSMg01no120_o10.b1 PHD_FILE: MSMg01no120_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:30 2005CHROMAT_FILE: MSMg01no120_o10.g1 PHD_FILE: MSMg01no120_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCCT
TATGCTCCCACTTCCTACCCCTATAGCCTTCAATTCCATCTGTGGCTTGG
ATAGAATAAATCACTTCCATCTGCTCTCTGACAAGGCCTTGGAATGAACA
AAAGAAAGCAACAGAAGCGGCAAGCTCAGGCGCATTCCTTGCTGGCCTAG
GAAAGCACTGGCCTCCTGCAGCCTTCCCTGCCTCTTTTGGTCGGTATCCA
AGTAATAGGAAGGACAGCACTAAGTGTAGTTACAGGTATGGAAACCTCAT
TCAGTGATCCCTGTAAGCAGGTATCCATGGTCACCCTTTTACAGATGAAT
CTATAAAAGAGCCGCAGGGTAGTTATCCGGCTGGATGTCCTGACTCTGAA
TAAAATTGTCACTGTAGCTCCTGGTACATAGCTGCAGTCCAGTCTCTCTC
TCTTTTTTTTTTTTGGTTTTTCGAAACGGTTTCTCTGTAAAGACCTGGCT
GTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCATAAATCCG
CCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGGGCCACCACCGA
CCGGGCAGTCCAGTCTTTTTAAGGGAGGCGAACGGCTGGATGGATGGATG
GACGGATGTATGGATCCCCCTTTTTTCTAATATCATAACGATATTTTTC
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACGCCTTACTCTGGCCTTCACGGGCAC
CAGGTGTGCACAAAGTACACAAACATACATTCAGGCCAAACACCAATACA
CATAAAATAAATAAATAATATGTAGCGCCGATGAACTTAATGTGTAAGGG
AAGAGTCTGGCTTGCTAGGATGAATCTCAGGTGTGATGTCAATTTTGGTT
GCCAACTTGACTACATATCATTAAAACCCAAAAATGGCTCTGGATACCTG
TGAGGGACCTTTGCTTCACTAAATCATTTCTGCTGGAGGCCTGTATAAAG
GACATGAAAGAAGGAAGCCTCTCTCTCTGTCTGCTTGTCCTTGCCCCTTG
CTAGTAAATCCATTCCCTCCACTGGCATTAGAGCCTATGTCTTCAGGATT
CCAGTGTATACTGAAGACCAGTGGAGGCATCCAGCCTGTGGACTCAACAA
CTACTGGATTCTTGGACCTTCTGTTCATAGTTAGTCATTGTTGGGTTAGC
TCGACCATAGCCTGTAAATAATTTTAATAAAGCCATATATATGTACTATA
AGTTCTGTTACCTAGAGAACCCTGACTAATATACCAGATTTCCAACCCTG
ATAACCCTGTAGTATGTATGTATGTACGTACATATGTATGCTTGTATGTG
CATGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_o10.b1 MSMg01no120_o10.b1 CHROMAT_FILE:
MSMg01no120_o10.b1 PHD_FILE: MSMg01no120_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:30 2005
         (557 letters)



>mm_chr4_123354545_123355501
          Length = 957

 Score =  959 bits (496), Expect = 0.0
 Identities = 545/574 (94%), Gaps = 22/574 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttccttatgctcccacttcctacccctatagccttcaattccatctgtggcttg 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccttagggtcccacttcctacccctatagccttcaattccatctgtggcttg 264

                                                                       
Query: 65  gatagaataaatcacttccatctgctctctgacaaggccttggaatgaacaaaagaaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatagaataaatcacttccatctgctctctgacaaggccttggaatgaacaaaagaaagc 324

                                                                       
Query: 125 aacagaagcggcaagctcaggcgcattccttgctggcctaggaaagcactggcctcctgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aacagaagcggcaagctcaggcgcattccttgctggcctaggaaagcactggcctcctgc 384

                                                                       
Query: 185 agccttccctgcctcttttggtcggtatccaagtaataggaaggacagcactaagtgtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agccttccctgcctcttttggtcggtatccaagtaataggaaggacagcactaagtgtag 444

                                                                       
Query: 245 ttacaggtatggaaacctcattcagtgatccctgtaagcaggtatccatggtcacccttt 304
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 ttacaggtatggaaacctcattcagtgatccctggaagcaggtatccatggtcacccttt 504

                                                                       
Query: 305 tacagatgaatctataaaag-agccgcagggtagttatccggctggatgtcctgactctg 363
           ||||||||||||||| |||| | |||||||||||||||||||||||| ||||||||||||
Sbjct: 505 tacagatgaatctatgaaagca-ccgcagggtagttatccggctggacgtcctgactctg 563

                                                                       
Query: 364 aataaaattgtcactgtagctcctggtacatagctgcagtccagtctctctctct----- 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 564 aataaaattgtcactgtagctcctggtacatagctgcagtccagtctctctctctctctc 623

                                                                       
Query: 419 ---------------tttttttttttggtttttcgaaacggtttctctgtaaagacctgg 463
                          ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624 ttttttttttttttttttttttttttggtttttcgaaacggtttctctgtaaagccctgg 683

                                                                       
Query: 464 ctgtcctggaactcactctgtagaccaggctggcctcgaactcataaatccgcctgcctc 523
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 684 ctgtcctggaactcactctgtagaccaggctggcctcgaactcagaaatccgcctgcctc 743

                                             
Query: 524 tgcctcccaagtgctgggattaaaggcatgggcc 557
           ||||||||||||||||||||||||||||||||||
Sbjct: 744 tgcctcccaagtgctgggattaaaggcatgggcc 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)